BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934625
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38740.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1273 0.0
> AT2G38740.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr2:16194327-16196113 REVERSE
LENGTH=1165
Length=1165
Score = 1273 bits (689), Expect = 0.0
Identities = 750/779 (96%), Gaps = 5/779 (1%)
Strand=Plus/Plus
Query 3 TTTCTTCGGGTCTCATCACAATGAATGGCTTTTCTGATCTTAATCCTTCTGAGAGCAGCA 62
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||
Sbjct 99 TTTCTTCGGGTCTCATCACAATGAATGGCTTCTCTGATCTTAATCCTTCT--GAG-AGCA 155
Query 63 AACCTTCTCTGTCACATTTAGCTCCATTAGAAGCCATTCTGTTTGATGTTGATGGAACAC 122
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 AACCTTCTCTGTCACAACTAGCTCCATTAGAAGCCATTCTGTTTGATGTTGATGGAACAC 215
Query 123 TCTGTGATTCAGATCCCATCCACCTTATTGCCTTCCAAGAACTGCTTCAAGAGATTGGTT 182
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TCTGTGACTCAGATCCCATCCACCTTATTGCCTTCCAAGAACTGCTTCAAGAGATTGGTT 275
Query 183 TTAACAATGGTGTCCCAATTGATGAGAAATTCTTTGTTGAGAATATTGCTGGAAAACACA 242
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 276 TTAACAATGGTGTCCCAATCGATGAGAAATTCTTTGTTGAGAACATTGCTGGAAAACACA 335
Query 243 ATTCTGAAATTGCTCAAATTCTGTTCCCTGATGATGTTTCAAGAGGGTTAAAATTCTGTG 302
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 ATTCTGAAATTGCTCTACTTCTGTTCCCTGATGATGTTTCAAGAGGGTTAAAATTCTGTG 395
Query 303 ATGAGAAGGAAGCTCTTTATCGCAAAATTGTTGCAGAAAAGATAAAGCCACTTGATGGGC 362
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 396 ATGAAAAGGAAGCTCTTTACCGCAAAATTGTTGCAGAGAAGATAAAGCCACTTGATGGGC 455
Query 363 TTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTGCGGTTACAAACG 422
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 456 TTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTGCGGTAACAAACG 515
Query 423 CTCCAAAAGAAAACGCAGAGCTCATGATATCAAAACTTGGTCTGACTGATTTCTTTCAAG 482
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 516 CTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTCTGACTGATTTCTTTCAAG 575
Query 483 CAGTGATTCTTGGCTCTGAATGTGAACATCCCAAACCACACCCTGGACCTTACTTGAAGG 542
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 576 CAGTGATTCTTGGCTCTGAATGTGAATTTCCCAAACCACACCCTGGACCTTACTTGAAGG 635
Query 543 CTCTCAAAGTGCTTAACGTGTCAAAGGAGCACACTTTAGTGTTT-GAAGACTCGATCTCT 601
|||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 636 CTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACGCTAGT-TTTCGAAGACTCGATCTCT 694
Query 602 GGGATAAAAGCTGGAGTTGCAGCTGGAATGCCTGTGATTGGACTCACTACAGGTAATCCA 661
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 695 GGGATAAAAGCTGGAGTTGCAGCTGGAATGCCAGTGATTGGACTGACTACAGGGAATCCA 754
Query 662 GCAAGCCTGCTTGTGCAAGCAAAACCCGCTTTTCTCATCGAGAACTATGCGGATCCAAAA 721
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GCAAGCCTGCTTATGCAAGCAAAACCCGCTTTTCTCATCGAGAACTATGCGGATCCAAAA 814
Query 722 CTGTGGGCTGTGTTGGAAGAACTTGATAACAAGTCGTAAGTCTCACTTGTTTGGCTTAT 780
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 815 CTGTGGGCTGTGTTGGAAGAACTTGATAACAAGTCTTAAGTCTCACTTGTTTGGCTTAT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5