BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934635
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38830.1 | Symbols: | Ubiquitin-conjugating enzyme/RWD-like... 1461 0.0
> AT2G38830.1 | Symbols: | Ubiquitin-conjugating enzyme/RWD-like
protein | chr2:16225777-16226872 FORWARD LENGTH=1096
Length=1096
Score = 1461 bits (791), Expect = 0.0
Identities = 953/1028 (93%), Gaps = 23/1028 (2%)
Strand=Plus/Plus
Query 25 GGCAGCATCATCATCTTCTTCTCAAGTCAGATTCATAGAAAAAGCCCTTCTCGCCACCGG 84
|||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 6 GGCATCATCATCATCTTCTTCTCAAGTCAAATTCATAGAAAAAGCTCTTCTCGCCACCGG 65
Query 85 TTCCTTTGCTCTATCCTACACAGATCCTGATCAGAAATGGCTCATCAGAAAGCACCTATC 144
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 66 CTCCTTCGCTCTATCATACACAGATCCTGATCAAAAATGGCTCATCAGAAAGCACCTAAC 125
Query 145 TTCACTACTCCAAGATTATCCAAACTTCGAGCTCTCAACCGATATTTTCAATCACAACAA 204
|||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 126 TTCACTCCTCCAAGATTATCCAAACTTCGAACTCTCAACCGATACTTTCAACCACAACAA 185
Query 205 CGGAGCCAAAGTTCAACTCTTTTGCCTTGAAGGATCTCTACGTATTCGAAACTCCACTAC 264
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 186 CGGAGCCAAAGTTCAACTCTTTTGCCTTGAAGGATCTCTACGTATTCGAAGCTCCACTAC 245
Query 265 ACAACTCCCAACCGTGCAATTAACCATTTGGATTCACGAAAACTACCCATTAACGCCTCC 324
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 246 ACAACTCCCAACCGTACAATTAACCATTTGGATTCACGAAAACTACCCATTAACCCCTCC 305
Query 325 TCTGGTGTTTATAAACCCTAATTCAATCCCAATTCGCACCAACCACCCATTCGTCAATTC 384
||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 306 TCTAGTGTTTATAAACCCCAATTCAATCCCAATTCGCAACAACCACCCATTCATCAATTC 365
Query 385 TTCAGGCCT-CACAAACTCTAGATACATCGAAACATGGGAACACCCACGATGCAATTTAC 443
|||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TTCAGG-ATACACAAAGTCTAGATACATCGAAACATGGGAACACCCACGATGCAATTTAC 424
Query 444 TCGATTTCATTCGAAACCTCAAGAAAGTTCTCGCTAATGATCACCCATTTCTACACACTG 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TCGATTTCATTCGAAACCTCAAGAAAGTTCTCGCTAATGATCACCCATTTCTACACACTG 484
Query 504 AATCA--A-TCCCGACTCGGAATCAATCAGTTTCGAGAACCGAAGCCTTAGATCGATTAG 560
| ||| | |||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 485 ATTCATTAATCCCTACTCGGAATCAATCCGTTTCCAGAACCGAAGCCTTAGATCGATTAG 544
Query 561 CTACGAGTCTCCACTACGACGTTCTAACAATCATGGAGAGATCAGAGGAAGAGATTGAAA 620
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CCACGAGTCTCCACTACGACGTTCTAACAATCATGGAGAGATCAGAGGAAGAGATTGAAA 604
Query 621 ACCTATGGAAACTTCAATCAGAGGTGAAGCAAAGATCTGAATCGGTTAAAACAATCATCA 680
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 605 ACCTATGGAAGCTTCAATCAGAGGTGAAGCAAAGATCTGAATCGGTTAAATCAATCATCA 664
Query 681 ATGAGCTTGAGATGGAGAGAGAGACATTAAAGGCGAGAGCTTTAAATCTCAAAGATGATT 740
|||||||||||| ||||||| ||||||||||| ||||||||| || ||||| || ||||
Sbjct 665 CTGAGCTTGAGATTGAGAGAGGGACATTAAAGGTGAGAGCTTTGAAGCTCAAGGAAGATT 724
Query 741 CCGATGTTTTGGCGACATGGGTGGAGACGAACTATGATACGTTGATGAAAGCGACGTCGA 800
||||||||||| |||||||||| |||| ||||||| | | || || ||||||||
Sbjct 725 CCGATGTTTTGACGACATGGGTAGAGATGAACTAT--T---T-GA--AATT-GACGTCGA 775
Query 801 TGGATATGGGAA---TCGAGGAAATGTTTGAAATTGAACCGGAAGTGGAGGGATTGGCGG 857
|||||||||||| | || |||||||| ||||||||| |||||||||||||||||||||
Sbjct 776 TGGATATGGGAAGAATTGAAGAAATGTTCGAAATTGAATCGGAAGTGGAGGGATTGGCGG 835
Query 858 GAGATGACGCCATTGAAGATGTGTTGAGAGTACTGGAAGAAGCTGCGGAGAGAGGAGAGT 917
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 836 GAGATGACGCCATTGAAGATGTGTTGAGAGTATTGGAAGAAGCTGCGGAGAGAGGAGAGT 895
Query 918 TGGAGATAGGTTCGTATCTAAAGCAAGTGAGAGTGTTGGCCAGAGAACAATTCTTCATTA 977
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 896 TGGAGATTGGTTCGTATCTAAAGCAAGTGAGAGTGTTGGCTAGAGAACAATTCTTCCTTA 955
Query 978 GGCATT-ATC---GTTTAAAACTC-GAATTTCCATATTTGAGTATGTTGTGAAttttttt 1032
||||| ||| ||||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 956 AGCATTTATCATCGTTTAAAACTCAGAATTTTCATATTTGAGTATGTTGTGATTTTTTTT 1015
Query 1033 -ttttttt 1039
|||||||
Sbjct 1016 GTTTTTTT 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5