BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934640

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43465.1 | Symbols:  | RNA-binding ASCH domain protein | chr...   377    4e-104


> AT2G43465.1 | Symbols:  | RNA-binding ASCH domain protein | chr2:18047533-18049763 
REVERSE LENGTH=1420
Length=1420

 Score =  377 bits (204),  Expect = 4e-104
 Identities = 325/380 (86%), Gaps = 21/380 (6%)
 Strand=Plus/Plus

Query  1    TTTGCTCCGATTGAGTAAAAAATGGA-TAGACTGAGAGATTGCCTAGAGGAGATGGTGAA  59
            |||||||| |||||||  || || || || | | |||||||| ||||| || ||||||||
Sbjct  35   TTTGCTCCAATTGAGT-GAAGAT-GATTAAAATTAGAGATTGTCTAGATGAAATGGTGAA  92

Query  60   ATTCACACTAGATTGCCGTGTAGAATTCGATTTAGAGCTCACCGATGATTTCTGCTTTGG  119
             |||||||| |||| | |||||||||||||| ||| ||| ||||  || |||||||  ||
Sbjct  93   GTTCACACTCGATTACTGTGTAGAATTCGATATAGGGCTTACCGGGGAGTTCTGCTCCGG  152

Query  120  CCTTCTTTGCGGCGAATCAATTCTTCTCGACGGTGAACGAATCGAATCGTCTTCCCACGC  179
            |||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||
Sbjct  153  CCTTCTGTGCGGCGAATCAGTTCTTCACGACGGTGAACGAATCGAATCGTCTTCCTACGC  212

Query  180  TTTGCTACACCGATTTGGAGGTGTTCCTGATTATCCCTTGTACAAGCTTCTTGCTTTAGG  239
            |||||||||||| |||  |||||||||||||||||||||||||||| |||| ||||||||
Sbjct  213  TTTGCTACACCGGTTTTCAGGTGTTCCTGATTATCCCTTGTACAAGGTTCTAGCTTTAGG  272

Query  240  TCTGCTGAAATCAATTGTTTCTGGTTCTGTCTGTGGAACCTTTGAGAATATTTCGTTGGG  299
            ||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||
Sbjct  273  TCTGCTGAAATCAATTGATTCTGGTTCTTTCTGTGGAACCTTTGAGAAAATTTCGTTGGG  332

Query  300  GAAGGA-G-A----G----A-G-A-A--GA---TGAGTGGAGCAAGCTCATAAATCAAAA  341
            |||||| | |    |    | | | |  ||   ||||||||||||||| |||||||||||
Sbjct  333  GAAGGAAGTAATCCGGTTGAAGGAGAAAGAAGATGAGTGGAGCAAGCTGATAAATCAAAA  392

Query  342  GGGTTCTGAGTTAGTCAATG  361
            ||||||||||||||||||||
Sbjct  393  GGGTTCTGAGTTAGTCAATG  412



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20609777090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5