BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934641

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38880.8 | Symbols: NF-YB1 | nuclear factor Y, subunit B1 | ...   562    1e-159


> AT2G38880.8 | Symbols: NF-YB1 | nuclear factor Y, subunit B1 
| chr2:16238492-16240754 FORWARD LENGTH=882
Length=882

 Score =  562 bits (304),  Expect = 1e-159
 Identities = 322/331 (97%), Gaps = 0/331 (0%)
 Strand=Plus/Plus

Query  26   AATGGCGGATACGCCTTCGAGCCCGGCCGGAGATGGCGGAGAAAGCGGCGGCTCCGTTAG  85
            |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct  101  AATGGCGGATACGCCTTCGAGCCCAGCTGGAGATGGCGGAGAAAGCGGCGGTTCCGTTAG  160

Query  86   GGAGCAGGATCGATACCTTCCTATAGCTAATATCAGCAGGATCATGAAGAAAGCGTTGCC  145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  161  GGAGCAGGATCGATACCTTCCTATAGCTAATATCAGCAGGATCATGAAGAAAGCGTTGCC  220

Query  146  TCCTAATGGAAAGATTGGAAAAGATGCTAAGGACACTGTTCAGGAATGTGTTTCTGAGTT  205
            ||||||||| ||||||||||||||||||||||| || ||||||||||| || ||||||||
Sbjct  221  TCCTAATGGTAAGATTGGAAAAGATGCTAAGGATACAGTTCAGGAATGCGTCTCTGAGTT  280

Query  206  CATCAGCTTCATCACTAGCGAGGCCAGTGATAAGTGTCAAAAAGAGAAAAGGAAAACTGT  265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  281  CATCAGCTTCATCACTAGCGAGGCCAGTGATAAGTGTCAAAAAGAGAAAAGGAAAACTGT  340

Query  266  GAATGGTGATGATTTGTTATGGGCAATGGCAACATTAGGATTTGAGGATTACCTGGAACC  325
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  341  GAATGGTGATGATTTGTTGTGGGCAATGGCAACATTAGGATTTGAGGATTACCTGGAACC  400

Query  326  TCTAAAGATATACCTAGCGAGGTACAGGGAG  356
            |||||||||||||||||||||||||||||||
Sbjct  401  TCTAAAGATATACCTAGCGAGGTACAGGGAG  431


 Score =  167 bits (90),  Expect = 1e-40
 Identities = 100/105 (95%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  355  AGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGCGGAGATGGATCTAATAGAGATGCAG  414
            |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct  499  AGTTGGAGGGTGATAATAAGGGATCAGGAAAGAGTGGAGATGGATCAAATAGAGATGCTG  558

Query  415  GTGGAGGTGTTTCTGGTGAAGAAATGCCGAGCTGGTGAAAGAAGT  459
            |||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct  559  GTGGCGGTGTTTCTGGTGAAGAAATGCCGAGCTGGTAAAAGAAGT  603



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22454663709


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5