BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934663
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39080.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1482 0.0
> AT2G39080.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr2:16309798-16312541 REVERSE LENGTH=1305
Length=1305
Score = 1482 bits (802), Expect = 0.0
Identities = 1005/1098 (92%), Gaps = 33/1098 (3%)
Strand=Plus/Plus
Query 1 AGCTTTTTGC--TTTTATCTTGATGGGTTTCATCTCTTGCATTTCATATCCGACGACCAA 58
|||||||||| |||| |||| |||||||||||||||||||| |||| |||||||| |||
Sbjct 45 AGCTTTTTGCTTTTTTGTCTTAATGGGTTTCATCTCTTGCATCTCATTTCCGACGATCAA 104
Query 59 TTCAAGAATTCTATCGACCCATCA-TTTCTCCAAGCAATCGACTTCA--G-CATCTTCAT 114
|||||||||||||||||| || || ||| |||||||| ||||||||| | | |||||||
Sbjct 105 TTCAAGAATTCTATCGACTCACCACTTT-TCCAAGCACTCGACTTCAGCGTCTTCTTCAT 163
Query 115 TTTCACTTAAGTTTGCTTTGAGACGTCAGGAGGATAAACCCAAAAG-CTCCTTCTTTCTT 173
|||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||
Sbjct 164 ATTCACTTAAGTTTGCTTTGAGACGTCAGGAGGATAAACCC-AAAGTCTCGTTTTTTCTT 222
Query 174 CCATCAACGTCTTC-TAAAATGGCGACTCCTATTCAAGCCTCTTCTTCCTCCACCATTGG 232
|||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 223 CCATTAACGTCTTCGT-TAATGGCGACCCCTATTCAAGCCTCTTCTTCCTCCACCATTGG 281
Query 233 TGAGACCAGTGATGGCTTGAAGGTCCAGTCTCATGTTTCAATTGGGGCAAACGATTTGCT 292
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 282 TGAGACCAGTGATGGCTTGAAGGTCCAGTCTCATGTTTCAATTGGAGCAAACGATCTGCT 341
Query 293 GATTGTTGGACCAGGTGTTCTTGGACGCTTAGTTGCAGAACAATGGAGACAGGAACATCC 352
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 342 GATTGTTGGACCGGGTGTTCTTGGACGCTTAGTTGCAGAACAGTGGAGACAGGAACATCC 401
Query 353 AGAGTGTCAAATCGTTGGGCAGACAGTAACAACAAATCATCATGATGAGTTGGAGAAGTT 412
||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 402 AGAGTCTCAAATCTTTGGGCAGACAGTAACAACAAATCATCATGGTGAGTTGGAGAATTT 461
Query 413 GGGTATCAAACCATCTCTTAAAGGAACCGAATATGGGGGCAAGTTCTCCTATGTGATCTT 472
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 462 GGGTATCAAACCATCTCTTAAAGGAACCGAATATGGGGGAAAGTTCTCCTATGTGATCTT 521
Query 473 TTGTGCTCCTCCATCACAAAGCGCTGATTATGCTGGTGAAGTCAGGAATGCAGCATCAAA 532
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TTGTGCTCCACCATCACAAAGCGCTGATTATGCTGGTGAAGTCAGGAATGCAGCATCAAA 581
Query 533 CTGGAACGGTGAAGGATCATTCTTATTCACATCTAGTTCTGCACCTTATGATTGCTTTGA 592
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CTGGAATGGCGAAGGATCATTCTTATTCACATCTAGTTCTGCACCTTATGATTGCTTTGA 641
Query 593 TAACGGAGAATGCAACGAGGATTCTCCAGTGGTGCCACTGGGAAAGAGTCCAAGAACTGA 652
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 642 TAACGGAGAATGCAACGAGGATTCTCCAGTAGTGCCACTGGGAAAGAGTCCAAGAACTGA 701
Query 653 TGTGCTTTT-AAAGGCTGAAAAAGTGGTGTTGGAATGTGGAGGGACTGTCCTTAGA-T-- 708
||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 702 TGTGCTTTTGAAAG-CTGAAAAAGTAGTGTTGGAATGTGGAGGGACTGTCCTTAGACTAG 760
Query 709 ------T-------GA--CTAGAGGTGCACATACATACTGGTTGAGTAAGG-GTACAGTA 752
| || |||||||||||||||| |||||||||||||||| | ||| |
Sbjct 761 CAGGGCTTTACACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAG-ACAATT 819
Query 753 GATGCTCGTCCTGATCATATCCTGAATCTCATACACTATGAGGATGCAGCGTCGCTGGCA 812
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 820 GATGCTCGTCCTGATCATATTCTAAATCTCATACACTATGAGGATGCAGCATCGCTGGCA 879
Query 813 GTTGCAATCATGAAAAAGAAACCCGGTGGTCAGATTTTCTTGGGCTGTGACAACCATCCA 872
|||||||||||||| |||||| |||||| || |||||||||||| ||||||||||||||
Sbjct 880 GTTGCAATCATGAAGAAGAAAGCCGGTGCTCGGATTTTCTTGGGTTGTGACAACCATCCT 939
Query 873 TTGTCAAGGCAAGAGGTGATGGACCTGATGGATCAAAGTGGAAAATATGATAAAAAGTTC 932
||||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||||||
Sbjct 940 TTGTCAAGGCAAGAGGTGATGGACCTGATGGCTCAAAGCGGAAAATTTGATAAGAAGTTC 999
Query 933 GAAGGTTTCACGAGCACCAGTGGTCCTTTAGGGAAGAAGCTGAACAACTCTAAGACACGA 992
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AAAGGTTTTACAAGCACCAGTGGTCCTTTAGGGAAGAAGCTGAACAACTCTAAGACACGA 1059
Query 993 GCTGAAATAGGATGGGAGCCAAAGTATCCAAGTTTTGCTCAATTTCTTGGAGTATCAATG 1052
|| || |||||||||||||| ||||||||||| ||||| |||||| |||||||||| |
Sbjct 1060 GCGGAGATAGGATGGGAGCCGAAGTATCCAAGCTTTGCCCAATTTTTTGGAGTATCGACA 1119
Query 1053 TAATATCTTCAATTGGAT 1070
|||||| || | ||||||
Sbjct 1120 TAATATTTTTACTTGGAT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52710572250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5