BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934665
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39100.1 | Symbols: | RING/U-box superfamily protein | chr2... 887 0.0
> AT2G39100.1 | Symbols: | RING/U-box superfamily protein | chr2:16317438-16319387
FORWARD LENGTH=1326
Length=1326
Score = 887 bits (480), Expect = 0.0
Identities = 590/639 (92%), Gaps = 23/639 (4%)
Strand=Plus/Plus
Query 193 AAAATACCACAAGGAGCATTTACCGATTCTTCGTGATCGTGAGACTTTAACTTATCATCG 252
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 312 AAAATACCATAAGGAGCAATTACCAATTCTTCGTGATCGTGAGACTTTAACTTATCATCG 371
Query 253 GAATAATCCTTCCGGTCGCCGGAGGATAATTCGAAGGTGGAGGGATGTTTTGGAAAACTC 312
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 372 GAATAATCCTTCCGATCGCCGGAGGATAATTCAAAGGTCGAGGGATGTTTTGGAAAACTC 431
Query 313 TAGCTCAAGATCAAGGCCATTGCCATGGCGGAGATCATTTGGACGGCCTGGTTCAGTTCC 372
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 432 TAGCTCAAGATCAAGGCCATTGCCATGGCGGAGATCATTTGGACGACCAGGTTCAGTTCC 491
Query 373 TGATTCTATCATCTTCCAGCGAAAGCTTCAGTGGCGAGCTAGTGTTGGCTCTAAATGCAG 432
||||||| | ||||||||||||||||||||||||||||||| | | ||
Sbjct 492 TGATTCTGTTATCTTCCAGCGAAAGCTTCAGTGGCGAGCTA------G--C---AT---- 536
Query 433 CATATACGATAAGCAATTACGAGCTGTTCGATTACATTCGAGGCGAAGCTTGGAACTATG 492
||| || |||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 537 -ATACAC--TAAGCAATTACGAGCTGTTCGATTACATTCAAGGC---GCTTGGAACTAAG 590
Query 493 TTTGGCGGGGAATGATCAGA-CAAGAGCAAAGATAACTGAAAGAATTGAGCCATGGATTA 551
|||||||| ||||||| | | ||| |||||||||||||||||||||||||||||||||||
Sbjct 591 TTTGGCGGTGAATGATTACACCAA-AGCAAAGATAACTGAAAGAATTGAGCCATGGATTA 649
Query 552 GAAGAGAGCTTCAGGCAGTCCTTGGAGATCCTGATCCATCAATTATTGTTCATTTTGCGT 611
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 650 GAAGAGAGCTTCAGGCAGTCCTTGGAGATCCTGATCCCTCAGTTATTGTTCATTTTGCGT 709
Query 612 CAGCTCTTTTCATCAAAAGGCTTGAGAGAGAGAATAATCGACAATCCGGGCGGACCGGGA 671
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 710 CAGCTCTTTTCATCAAAAGGCTTGAGAGAGAGAATAATCGACAAACCGGGCAGACCGGGA 769
Query 672 TGTTGGTGGAAGACGAAGTCTCCTCTCTCCGAAAATTCTTGTCTGATAAGGTGGATATAT 731
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 770 TGTTGGTGGAAGATGAAGTCTCCTCTCTTCGAAAATTCTTGTCTGATAAGGTGGATATAT 829
Query 732 TTTGGCATGAACTAAGATGTTTCGCGGAGAGTATTCTCACGATGGAGACGTATGATGCAG 791
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 830 TTTGGCATGAACTAAGATGTTTTGCGGAGAGTATACTCACGATGGAGACTTATGATGCAG 889
Query 792 TGGTTGAATACAATGAGGTGGCGTAATAGCAGTAAAAAA 830
||||||||||||||||||||| |||||||||||||||||
Sbjct 890 TGGTTGAATACAATGAGGTGGAGTAATAGCAGTAAAAAA 928
Score = 183 bits (99), Expect = 2e-45
Identities = 130/145 (90%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 37 GAAATTTGCTGAGAGAGTAATCTTAACTGCTTTAC-GGGAGAAATCGTGTCTGATATGCC 95
||||||||| | ||||| ||| || ||||||||| ||| ||||||||||| ||||||||
Sbjct 93 GAAATTTGCAGGGAGAGCAATATTTCCTGCTTTACAGGG-GAAATCGTGTCCGATATGCC 151
Query 96 TCGAAAATCTAACCGAGCGACGATCCGCCGCCGTTATTACAGTATGTAAGCACGGATACT 155
|||||||||||||||||||| ||||||||||||| || || || || |||||||||||||
Sbjct 152 TCGAAAATCTAACCGAGCGAAGATCCGCCGCCGTGATCACGGTGTGCAAGCACGGATACT 211
Query 156 GCCTTGCTTGTATTCGGAAGTGGAG 180
|||||||||||||||||||||||||
Sbjct 212 GCCTTGCTTGTATTCGGAAGTGGAG 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5