BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934667
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39120.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1803 0.0
> AT2G39120.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr2:16321794-16322957 FORWARD LENGTH=1164
Length=1164
Score = 1803 bits (976), Expect = 0.0
Identities = 1109/1172 (95%), Gaps = 13/1172 (1%)
Strand=Plus/Plus
Query 21 ATGCTCTATATTCGCCGCCATGCCAAAACCCTAGCTTCCTCCTGCACCAACCTTACTCAG 80
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGCTCTCTATTCGCCGCCATGCCAAAACCGTAGCTTCCTCCTGCACCAACCTTACTCAG 60
Query 81 AAACGAACCTACGTCGACGTTTACATGAAATGGAAGAGAGATCCTTATTTCGACAACATC 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACGAACCTACGTCGACGTTTACATGAAATGGAAGAGAGATCCTTATTTCGACAACATC 120
Query 141 GAACACATTCTCCGATCATCTCAGCTCAAATCCGTCATCGGTCTCAAGAACTGTATCGTC 200
|||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 121 GAACACATCCTCCGATCATCTCAGCTCAAATCCGTCGTCTCTCTTAAGAACTGTATCGTC 180
Query 201 CAGGATCCTAATCGCTGCATTCCGATATCTGCCATCTCCAAGAAGACGCGTCAATTCGAT 260
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 181 CAGGAACCTAATCGCTGCATTCCGATCTCTGCCATCTCCAAGAAGACTCGTCAATTCGAT 240
Query 261 GTATCAACAAAAATCGCTCAGTTTTTAAGGAAATTTCCTTCAATCTTCGAGGAGTTCGTT 320
|||||||| ||||||||||| || |||||||| |||||||||||||| || |||||||||
Sbjct 241 GTATCAACCAAAATCGCTCACTTCTTAAGGAAGTTTCCTTCAATCTTTGAAGAGTTCGTT 300
Query 321 GGTCCAGAGTATAATCTCCCATGGTTTAGATTGACACCAGAAGCTACAGAGCTCGATAAG 380
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |
Sbjct 301 GGTCCAGAGTATAATCTCCCATGGTTTAGATTGACACCAGAAGCAACAGAACTAGATAGG 360
Query 381 CAAGAGAGAATCGTATACGAAACTTAC-GCAGAGGATTTGCGGGATAGGTTGAAGAAATT 439
||||||||| |||||||| |||||| | ||||| |||||||| |||||||||||||||||
Sbjct 361 CAAGAGAGAGTCGTATACCAAACTT-CTGCAGATGATTTGCGTGATAGGTTGAAGAAATT 419
Query 440 GATTCTGATGAGTAAAGATAATGTTTTGCCATTAAGTATAGTTCAAGGAATGAAATGGTA 499
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 GATTCTGATGAGTAAAGATAATGTTTTGCCACTAAGTATAGTTCAAGGAATGAAATGGTA 479
Query 500 TTTAGGTTTACCTGATGATTACTTGCAATTTCCAGAGATGAATTTAGATTCTTCGTTTAG 559
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 480 TTTAGGTTTACCTGATGATTACTTGCAGTTTCCAGATATGAATTTAGATTCTTCGTTTAG 539
Query 560 GTTTGTGGATATGGAAGATGGAGTTAAAGGTTTAGCAGTAGACTATAATGGAG-A--TAA 616
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 540 GTTTGTGGATATGGAAGATGGAGTTAAAGGTTTAGCAGTAGATTATAATGGAGGAGATAA 599
Query 617 GGTTTTGTCTGTGTTGCagaagaatgcaatgaagaagagaggaagaagaggagaattg-g 675
|||||||||||||||||||||||||||||||||||||||| | || | | |||| || |
Sbjct 600 GGTTTTGTCTGTGTTGCAGAAGAATGCAATGAAGAAGAGA--A-GA-G-G-AGAAGTGAG 653
Query 676 atttagaagagaTTGAGTTTCCTCTGTTTCCATCAAAAGGTTGTAGATTGAGAGTCAAAA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 654 -TTTAGAAGAGATTGAGTTTCCTCTGTTTCCATCAAAAGGTTGTAGATTGAGAGTCAAGA 712
Query 736 TTGAAGATTGGTTAAAAGAGTTTCAAAAGCTTCCTTATGTATCACCATATGATGATTATT 795
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TTGAAGATTGGTTAATGGAGTTTCAAAAGCTTCCTTATGTATCACCATATGATGATTATT 772
Query 796 CATGTTTGGATCCAAGTAGTGATATAGCAGAGAAGAGAGTTGTTGGGTTTCTTCATGAAT 855
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 773 CATGTTTGGATCCAAGTAGTGATATAGCAGAGAAGAGAGTTGTTGGTTTTCTTCATGAAT 832
Query 856 TGCTTTGTCTTTTCGTCGAGCATTCCGCAGAGAGGAAGAACTTGTTATGTCTCAAGAAGC 915
|||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||
Sbjct 833 TGCTTTGTCTTTTCGTTGAGCATTCTGCTGAGAGGAAGAAGTTGTTATGTCTCAAGAAGC 892
Query 916 ATTTCGGATTGCCGCAAAAGGTTCATAAGGCGTTTGAGAGACATCCGCAGATTTTTTACT 975
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 893 ATTTTGGATTGCCGCAAAAGGTTCATAAGGCGTTTGAGAGACATCCGCAGATTTTCTACT 952
Query 976 TGTCTATGAAGAACAAAACTTGTACAGCTATTCTAAGAGAGCCTTATAGAGATAAAGCCA 1035
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 953 TGTCTATGAAGAATAAAACTTGTACAGCTATTCTTAGAGAGCCTTATAGAGATAAAGCTA 1012
Query 1036 GTGTAGAAACACATCCTGTGTTAGCTGTAAGGAAGAAATACATCCAGTTGATGAAGAATT 1095
|||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1013 GTGTTGAAACACATCCTGTGTTGGGGGTAAGGAAGAAATACATCCAGTTGATGAAGAATT 1072
Query 1096 CAGAGTTGATTCTGAAGAGTAGAAGGAATCGTTTCGGGTTTAGGGACGAAGGGATTGTAG 1155
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1073 CAGAGTTGATTCTGAAGAGTCGAAGGAATAGTTTCGGGTTTAGGGACGAAGGGGTTGTAG 1132
Query 1156 AGAAAGATTTGGATTTGGATTTTGAAGGCTAA 1187
| ||||||||||||||||||||||||||||||
Sbjct 1133 ATAAAGATTTGGATTTGGATTTTGAAGGCTAA 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5