BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934672
Length=2401
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39190.2 | Symbols: ATATH8 | Protein kinase superfamily prot... 3594 0.0
> AT2G39190.2 | Symbols: ATATH8 | Protein kinase superfamily protein
| chr2:16349968-16355963 FORWARD LENGTH=2835
Length=2835
Score = 3594 bits (1946), Expect = 0.0
Identities = 2218/2345 (95%), Gaps = 35/2345 (1%)
Strand=Plus/Plus
Query 41 ACACTTCGCTGATGTTGTACGCAATGACGTTGATTTCCTGAAGAACAAAATCGGCATCGG 100
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 304 ACACTTCGCTGATGTTGTACGCAATGACGTTGATTTCCTGAAGAACAAAATCGGTATCGG 363
Query 101 ACTCCGGTGGGCGAATGAGGCTTTTCGTGTACCGGAAGTGACTAAATCCGCTGAGGAATT 160
|||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 364 ACTCCGTTGGGCTAACGAGGCTTTTCGTGTACCGGAAGTGACTAAATCCGCTGAGGAACT 423
Query 161 GTTTTGGCTTCGGCATCTTGAGGATCATGCTTCTTC-GAATTTGGAGTCACAATCTTGGC 219
|||||||||| ||||||||||||||||| |||| || ||||||| |||||||||||||||
Sbjct 424 GTTTTGGCTTAGGCATCTTGAGGATCATACTTC-TCAGAATTTGAAGTCACAATCTTGGC 482
Query 220 CTCAGCCTTCGTACTCAGGGCTCTCTGGGGTGGACTTGTTCATGGCTGATGTCAAAGCTT 279
|||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct 483 CTCAGCCTTCCTACTCAGGGCTCACTGGGGTGGATTTGTTCATGGCTGATGTCAAAGCCT 542
Query 280 TGGAGGCATATGCTGCTTACTTTTACTGTCTTTCTAAGATGTGGTCAAGACCACTTCCTG 339
||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 543 TGGAGACATATGCTGGTTACTTTTACAGTCTTTCTAAGATGTGGTCAAGACCACTTCCTG 602
Query 340 AAGTTTATGATTCACAAGCTGTTGCAGATTACTTTAATTGCAGGCCGCATGTCGTTGCCT 399
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 603 AAGTTTATGATTCACAAGCTGTTGCAGATTACTTTAATTGCAGGCCTCATGTCGTTGCCT 662
Query 400 TTAGGCTTCTCGAGGTATTTTCTGCGTTCATGGTTGCTGCCATCAGATTACGAACATCAG 459
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 663 TTAGGCTTCTCGAGGTATTTTCTGCGTTCACGATTGCTGCCATCAGATTACGAACATCAG 722
Query 460 CATCAGACAAAAGCAAAAGTTTAGAAGCTTCAGAGCAGAATTTTGGGATGGTGTTGAAAG 519
|||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 723 CATCAGTTAAGGGCAAAAGTTTAGAAGCTTCAGAGCAGATTTTTGGGATGGTGTTGAAAG 782
Query 520 AAACCATGCTACATTTGGGTCCAACTTTTATTAAAGTTGGTCAATCGCTTTCGACGAGGC 579
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 783 AAACCATGCTACATTTGGGCCCAACTTTTATCAAAGTTGGTCAATCGCTTTCCACGAGGC 842
Query 580 CAGATATCATTGGGACTGAAATCTCCAAGGCACTATCTGAACTGCATGACCGAATCCCTC 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CAGATATCATTGGGACTGAAATCTCCAAGGCACTATCTGAACTGCATGACCGAATCCCTC 902
Query 640 CCTTTCCCTGGCCTGAGGCTGTAAAAATCATTGAAGAGGAATTAGGTGGTCCTGTCGAGT 699
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
Sbjct 903 CCTTTCCCTGGCCTGAGGCTGTAAAAATCCTTGAAGGGGAATTAGGTGGTCCTGTCGAAT 962
Query 700 CATTCTTTAGCCAGTTTTCTCAAGAAACTGTAGCAGCAGCATCCTTTGGTCAGGTCTACC 759
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CATTCTTTAGTCAGTTTTCGCAAGAAACTGTAGCAGCAGCATCCTTTGGTCAGGTCTACC 1022
Query 760 GAGGAAGGACTCTTGATGGTTCAGATGTTGCAGTGAAAGTTCAGCGCCCTGATCTGAGAC 819
|||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GAGGAAGGACCCTCGATGGTGCAGATGTTGCAGTGAAAGTTCAGCGCCCTGATCTGAGAC 1082
Query 820 ATGCAGTGCTACGCGACATTTACATTTTGCGACTTGGGTTAGGTGTATTACGAAAGGTAG 879
||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct 1083 ATGCAGTGCTACGCGACATCTACATTCTGCGACTTGGGTTAGGTGTATTGCGAAAGGTAG 1142
Query 880 CAAAGAGAGAAAATGACATTCGTGTATATGCTGATGAGCTTGGAATGGGTTTGGCTGGAG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CAAAGAGAGAAAATGACATTCGTGTATATGCTGATGAGCTTGGAATGGGTTTGGCTGGAG 1202
Query 940 AATTGGACTTTACTTTAGAGGCTGCCAATGCCT-TGGAATTTCAGGAAGCTCATTCACGA 998
||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 1203 AATTGGACTTTACTTTAGAGGCTGCCAATGCCTCT-GAATTTCAGGAAGCTCACGCACGA 1261
Query 999 TTTTCCTATATCCGGGTTCCAAAAGTATATAAGCATCTAACGCGCAAAAGAGTTTTGACC 1058
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1262 TTTTCCTATATCCGGGTTCCAAAAGTATATCAGCATCTAACGCGCAAAAGAGTTTTGACC 1321
Query 1059 ATGGAATGGATGGTTGGTGAAAGCCCCACCGATCTACTCGCAATATCTTCTGGTTACTCT 1118
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1322 ATGGAATGGATGGTTGGTGAAAGCCCAACCGATCTACTCGCAATATCTTCTGGTTACTCT 1381
Query 1119 GATCATGACAATGAGAGTCATGA-AAAGCAAAAAATGGAAGCGAGAAGGCGTCTTCTTGA 1177
||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 1382 GATCATGACAATGAGAGTCATGAGAAA-CAAAAAATTGAAGCGAGAAGGCGTCTTCTTGA 1440
Query 1178 TCTAGTGAACAAAGGGGTAGAGGCAACACTAGTTCAACTCCTTGATACAGGTATTTTGCA 1237
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1441 TCTGGTGAACAAAGGGGTAGAGGCAACTCTAGTTCAACTCCTTGATACAGGTATTTTGCA 1500
Query 1238 TGCAGATCCGCATCCTGGAAATCTGCGGTACACAACATCAAGACAAATAGGGTTTTTGGA 1297
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1501 TGCAGATCCGCATCCTGGAAACCTTCGTTACACAACATCAAGACAAATAGGGTTTTTGGA 1560
Query 1298 CTTTGGTTTAGTTTGTCGGATGCAAAGAAAACATCAGCTTGCCATGCTCGCATCAATTGT 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 CTTTGGTTTAGTTTGTCGGATGCAAAGAAAACATCAGCTTGCCATGCTCGCATCAATTGT 1620
Query 1358 GCATATCGTAAATGGTGATTGGGCCTTTCTTGTTGAATCTTTGACTGATATGGATGTCAT 1417
|||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 1621 GCATATCGTAAATGGTGATTGGGCCTGTCTTGTTGAATCGTTGATTGATATGGATGTCAT 1680
Query 1418 CACGCCAGGTGTTAATACCCGTCGTTTTACTCTGGATCTGGAATATGCATTGGGAGAGGT 1477
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 CACGCCAGGCGTTAATACCCGTCGTTTTACTCTGGATCTGGAATATGCATTGGGAGAGGT 1740
Query 1478 TAAACTTAGAAACGGGATTCCTGATATCGAGTTCACCAAGGTGCTTAGTAAAATAGTCAA 1537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TAAACTTATAAACGGGATTCCTGATATCGAGTTCACCAAGGTGCTTAGTAAAATAGTCAA 1800
Query 1538 AGTGGCCCTGAAGTATCAGCTACGCATGCCACCATACTTCACACTTGTTCTCCGTTCTCT 1597
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 1801 TGTGGCCCTGAAGTATCAGCTACGCATGCCACCATACTTCACACTTGTCCTCCG-T-TC- 1857
Query 1598 TGCTTGCTTGGAAGTTATTTGCGTTCTATTTGTCTTCCCAGGTCTGGCTGCAACTGGAGA 1657
| ||||||| | ||| | | ||||||||||||| |||||||
Sbjct 1858 T-CTTGCTT----G---CTTG-G----A-----------AGGTCTGGCTGCAGCTGGAGA 1893
Query 1658 TCCAAACTTTAAGACATTTGAGGCTGCATACCCTTTTGTGGTTCAAAAACTCATCACTGA 1717
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1894 TCCAAATTTTAAGACATTTGAGGCAGCATACCCTTTTGTGGTTCAAAAGCTCATCACTGA 1953
Query 1718 AAATTCAGCTGCAACAAGGAAGATTCTTCATTCGGCAGTCCTTAACAGAAAGAAGGAATT 1777
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1954 AAATTCAGCTGCAACAAGGAAGATTCTTCATTCGGCAGTCCTTAACCGAAAGAAGGAATT 2013
Query 1778 CCGATGGGAAAGGGTTGCTCTTTTCCTGAGTAAAAGTTCGACGAGGAAACAATCGCCACT 1837
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2014 CCGATGGGAAAGGGTTGCTCTTTTCCTGAGTAAAAGTTCTACGAGGAAACAATCGCCACT 2073
Query 1838 GGTAACGTTATCGAGGGATGAAACTTCTGTTGATAGTAGTTCCAATCCAACGGAAAAAGA 1897
| ||| |||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 2074 GCTAAAGTTATCAAGGGATGAAACTTCTGTTGATAGTAGTTCCAATCTAACGGACAAAGA 2133
Query 1898 TGCTGACAATGTAAGTTTGGTCTTGAGACTTTTGGCATCCAAAAACGGTGTGGTTCTTAG 1957
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2134 TGCTGACAATGTAAGTTTGGTCTTGAGACTTTTGGCATCCAAAAATGGTGTGGTTCTTAG 2193
Query 1958 AAGACTCTTGATGGCTGCGAACGGGACTTCACTGATCCGGACATTTATTTCAAGAGAGGC 2017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2194 AAGACTCTTGATGGCTGCGAACGGGACTTCACTGATCCGGACATTTATTTCAAGAGAGGC 2253
Query 2018 ACATGTCATCCGCCAGAAACTTTGCCTGACAATTGCAAATACGATGTACCAATGGATGGT 2077
|| |||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 2254 ACTTGTCATACGCCAGAAACTTTGCATGACGATTGCAACTACGATGTACCAATGGATGGT 2313
Query 2078 CGGAAGCCTCGGAATTGAATCCCTTAAATTCATCTCTCTTTCAGACCCACAACTATCTTC 2137
|||||||| ||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 2314 TGGAAGCCTTGGAATTGAATCCCTTAAATTCATTTCTCTTTCAGACCCACCACCATCTTC 2373
Query 2138 AGGAATCAACATTACAGTCAAAGACTTCAAGATTCTGAT-ACGCGACAAACGTGTCAGAG 2196
|||||||||||||||||||||||||||||||||||| || | ||||| || |||||||
Sbjct 2374 AGGAATCAACATTACAGTCAAAGACTTCAAGATTCTAATCAAT-GACAAGCGGGTCAGAG 2432
Query 2197 TGATACTGAGAAAGATACTGGAGTCTGCAAAGAGTGACCGAATTTTGATGCTCAGATTCT 2256
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2433 TAATACTGAGAAAGATACTGGAGTCTGCAAAGAGTGACCGAGTTTTGATGCTCAGATTCT 2492
Query 2257 GCTGGACTTCTTTTGTCATGTCTCTCACAACCACTGCTCTCGCTTGCCATCGGTTTGTTA 2316
|||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| |
Sbjct 2493 GCTGGACTTCCTTTGTCATGTCTCTCACCACCACTGCGCTTGCTTGCCATCGGTTTGTGA 2552
Query 2317 TATCGGTCTCTGAAGGTTACGTCAACTACTTATCTTTGTCTGCTCCAGTTGCACTTCGTA 2376
| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2553 TCTCGGTCTCTGAAGGTTACGTCAACTACTTATCTCTGTCTGCTCCAGTCGCACTTCGTA 2612
Query 2377 CCTGA 2381
|||||
Sbjct 2613 CCTGA 2617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119226294375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5