BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934673
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39200.1 | Symbols: MLO12, ATMLO12 | Seven transmembrane MLO... 3003 0.0
> AT2G39200.1 | Symbols: MLO12, ATMLO12 | Seven transmembrane MLO
family protein | chr2:16356148-16359813 REVERSE LENGTH=1854
Length=1854
Score = 3003 bits (1626), Expect = 0.0
Identities = 1720/1766 (97%), Gaps = 3/1766 (0%)
Strand=Plus/Plus
Query 6 TGAGCAGTGAAACTAATGGCAATAAAAGAGCGATCGTTGGAGGAGACACCAACATGGGCT 65
|||||||||||| |||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 2 TGAGCAGTGAAATTAATGGCAATAAAAGAGCGATCACTAGAGGAAACACCAACATGGGCT 61
Query 66 GTTGCTGTTGTTTGCTTCGTTCTCCTTTTCATTTCCATCATGATCGAATACTTCTTGCAC 125
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GTTGCTGTAGTTTGCTTCGTTCTCCTTTTCATTTCCATCATGATCGAATACTTCTTGCAC 121
Query 126 TTTGTTGGTCACTGGTTTAAAAAGAAGCACAAGAAAGCTTTATCTGAAGCTCTTGAAAAG 185
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 122 TTTATTGGTCACTGGTTTAAGAAGAAGCACAAGAAAGCTTTATCTGAAGCTCTTGAAAAG 181
Query 186 GTTAAAGCAGAGTTGATGCTTCTGGGATTCATATCGCTTCTATTGGTTGTATTGCAAACA 245
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GTTAAAGCAGAACTGATGCTTCTGGGATTCATATCGCTTCTATTGGTTGTATTGCAAACA 241
Query 246 CCAGTCTCCCAGATTTGCATTCCAAGAAATATTGCTGCGACTTGGCATCCTTGTAGCAAC 305
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CCAGTCTCCGAGATTTGCATTCCAAGAAATATTGCTGCGACTTGGCATCCTTGTAGCAAC 301
Query 306 CATCAAGAAATTGCTAAATACGGTAAAGATTATATCGACGATGGCCGCAAAATTCTTGAA 365
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 302 CATCAAGAAATCGCCAAATATGGTAAAGATTATATCGACGATGGCCGCAAAATTCTTGAA 361
Query 366 GATTTTGACTCCAAAGACTTTTATAGTCCTCGCCGAAATTTAGCCACCAAGGGTTATGAC 425
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 362 GATTTTGACTCCAACGACTTTTACAGTCCTCGCCGAAATTTAGCCACCAAGGGTTATGAC 421
Query 426 AAATGTGCAGAAAAGGGGAAAGTAGCATTAGTATCTGCTTATGGTATCCACCAGCTGCAT 485
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 422 AAATGCGCAGAAAAGGGGAAAGTAGCATTAGTATCTGCCTATGGTATCCACCAGCTGCAT 481
Query 486 ATATTCATCTTTGTGCTCGCTGTTTTTCATGTTCTCTACTGCATTATAACCTATGCTTTA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 ATATTCATCTTTGTGCTCGCTGTTTTTCATGTTCTCTACTGCATTATAACCTATGCTTTA 541
Query 546 GGAAAGACCAAGATGAAGAAATGGAAGTCATGGGAGAGAGAGACCAAAACAATTGAGTAC 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GGAAAGACCAAGATGAAGAAATGGAAGTCATGGGAGAGAGAGACCAAAACAATTGAGTAC 601
Query 606 CAATATGCCAATGATCCAGAGAGGTTCAGATTTGCAAGAGATACATCGTTCGGACGTAGA 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CAATATGCCAATGATCCAGAGAGGTTCAGATTTGCAAGAGATACATCGTTCGGACGTAGA 661
Query 666 CATTTGAATATATGGAGCAAGTCTACATTTACCCTCTGGATTACATGTTTCTTCAGACAG 725
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 662 CATCTGAATATATGGAGCAAGTCTACCTTTACCCTCTGGATTACATGTTTCTTCAGACAG 721
Query 726 TTCTTTGGATCAGTGACAAAAGTAGATTATCTTACACTAAGACATGGCTTTATTATGGCA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TTCTTTGGATCAGTGACAAAAGTAGATTATCTTACACTAAGACATGGCTTTATTATGGCA 781
Query 786 CATTTGCCAGCAGGAAGTGCAGCTCGTTTCGATTTTCAAAAATACATTGAAAGATCTTTG 845
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 782 CATTTGCCAGCAGGAAGTGCCGCTCGTTTCGATTTCCAAAAATACATTGAAAGATCTTTG 841
Query 846 GAACAAGATTTCACGGTGGTTGTCGGTATAAGCCCACTGATATGGTGCATTGCTGTCTTA 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GAACAAGATTTCACGGTGGTTGTCGGTATAAGCCCACTGATATGGTGCATTGCTGTCTTA 901
Query 906 TTCATACTGACCAATACACATGGATGGGACTCATATCTTTGGCTGCCCTTCATTCCCTTG 965
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 902 TTCATATTGACCAATACACATGGATGGGACTCATATCTTTGGCTGCCCTTCCTTCCCTTG 961
Query 966 ATTGTAATATTGATAGTAGGAGCAAAACTTCAAATGATAATATCGAAATTGGGATTAAGA 1025
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 962 ATTGTGATATTGATAGTAGGAGCAAAACTTCAAATGATAATATCGAAATTAGGATTAAGG 1021
Query 1026 ATTCAAGAAAAAGGAGATGTGGTTAAAGGAGCTCCTGTTGTTGAACCGGGTGATGATCTC 1085
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1022 ATTCAAGAAAAAGGAGATGTGGTTAAAGGAGCTCCTGTGGTTGAACCGGGCGATGATCTC 1081
Query 1086 TTTTGGTTTGGTCGTCCTCGTTTTATTCTCTTCCTCATTCACTTGGTTCTTTTCACGAAT 1145
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1082 TTTTGGTTTGGTCGTCCTCGTTTCATTCTCTTCCTCATTCACTTGGTTCTTTTCACGAAT 1141
Query 1146 GCATTTCAACTGGCTTTCTTCGTTTGGAGCACTTACGAATTCACACTCAAAAACTGCTTC 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 GCATTTCAACTGGCTTTCTTCGTTTGGAGCACTTACGAATTCACACTCAAAAACTGCTTC 1201
Query 1206 CACCACAAAACAGAAGATATCGCAATTAGGATCACCATGGGGGTATTAATACAAGTTCTA 1265
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1202 CACCACAAAACAGAAGACATTGCAATTAGGATCACCATGGGGGTATTAATACAAGTTCTA 1261
Query 1266 TGCAGCTACATCACTCTACCTCTCTATGCTCTTGTTACTCAGATGGGAACATCAATGAGG 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TGCAGCTACATCACTCTACCTCTCTATGCTCTTGTTACTCAGATGGGAACATCAATGAGG 1321
Query 1326 CCGACCATATTCAACGACAGGGTAGCCAATGCATTAAAGAAATGGCACCACACAGCCAAG 1385
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1322 CCGACAATATTCAACGACAGGGTAGCCAATGCATTGAAGAAATGGCACCACACAGCCAAG 1381
Query 1386 AAACAGACGAAACATGGACACTCGGGATCTAACACGCCTCACTCGAGCCGCCCTACTACG 1445
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1382 AAACAGACGAAACATGGACACTCAGGATCTAACACACCTCACTCGAGCCGTCCTACTACG 1441
Query 1446 CCAAAACATGGCATGTCACCGGTGCATCTCCTCCACAACTACAATAACCGCAGCCTCGAC 1505
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 CCAACACATGGCATGTCACCGGTGCATCTCCTCCACAACTACAATAACCGCAGCCTCGAC 1501
Query 1506 CAACAAACCAGCTTCACTGCCTCTCCTTCTCCTCCTAGATTCTCTGATTATAGCGGCCAA 1565
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1502 CAACAAACCAGCTTCACTGCTTCTCCTTCTCCTCCTAGATTCTCTGATTATAGCGGCCAA 1561
Query 1566 GGCCATGGCCATCAGCATTTCTTTGACCCTGAATCTCAGAATCACTCTTACCAGCGTGAG 1625
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1562 GGCCATGGCCATCAGCATTTCTTCGACCCTGAATCTCAGAATCACTCTTACCAACGTGAG 1621
Query 1626 ATAACAGATTCTGAATTCAGCAATAGTCATCATCCCCAAGTTGACATGGCAAGTCCTGTT 1685
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 ATCACAGATTCTGAATTCAGCAATAGTCATCATCCCCAAGTTGACATGGCAAGTCCTGTT 1681
Query 1686 AGAGAAGAGAAGGAGATTATTGAGCATGTCAAGGTTGATTTGTCTGAGTTTACGTTCAAG 1745
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 AGAGAAGAGAAGGAGATTGTTGAGCATGTCAAGGTTGATTTGTCTGAGTTTACGTTCAAG 1741
Query 1746 AAGTGATAGGACTTTTATACTTTTTA 1771
||||||||||||| ||||||||||
Sbjct 1742 AAGTGATAGGACT---ATACTTTTTA 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87599951025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5