BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg934676 Length=1531 Score E Sequences producing significant alignments: (Bits) Value AT2G39220.1 | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 |... 2427 0.0 AT3G54950.1 | Symbols: PLP7, PLA IIIA | patatin-like protein 6 ... 815 0.0 > AT2G39220.1 | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 | chr2:16374896-16377020 REVERSE LENGTH=2016 Length=2016 Score = 2427 bits (1314), Expect = 0.0 Identities = 1449/1516 (96%), Gaps = 2/1516 (0%) Strand=Plus/Plus Query 17 TACGATGCAAAGAGTACACAGCAAGCCGATTGATTCTATCGGAGCTTTTAAGCATTTAAT 76 |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| | Sbjct 366 TACGATGCAAAGAGTACACAACAAACCGATTGATTCTATCGGAGGTTTTAAGCATTTGGT 425 Query 77 CAAACAGAGTAACGGCGGTGACGGTGGAGTGACGGTGGCGGATATGCAAGAACCGAGCAT 136 |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 426 AAAACAGAGTAACGGCGGTGACGGTGGAGTGACGGCGACGGATATGCAAGAACCGAGCAT 485 Query 137 AGAGACGGATAAGCTTAGCTACGAGATTTTCTCGATTCTTGAAAGCAAGTTTCTTTTCGG 196 ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 486 CGAGACTGATAAGCTTAGCTACGAGATTTTCTCTATTCTCGAAAGCAAGTTTCTTTTCGG 545 Query 197 GTATGATGATGACCCGAAGCTTATGGAATCAAGGAGCAGAGACCCGAGTCCGGAGCAAGA 256 |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 546 GTATGATGATGACCTGAAGCTTATGGAATCAAGAAGCAGAGACCCGAGTCCAGAGCAAGA 605 Query 257 AACAGCATCACCGGCGATGGTGGATGGTTTGAACGGCGTCGTTCCGGGTTCAATTAAGAA 316 ||| |||||||||||||||||||| | ||| |||||||| ||||||||| || ||||||| Sbjct 606 AACGGCATCACCGGCGATGGTGGAAGCTTTAAACGGCGTTGTTCCGGGTACAGTTAAGAA 665 Query 317 CCAGAGAGGTAAAGTTTGTGTTTTGAGTATCGATAGTGGTGGAATGAGAGGGATTATACC 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 666 CCAGAGAGGTAAAGTTTGTGTTTTGAGTATCGATAGTGGTGGAATGAGAGGGATTATACC 725 Query 377 TGGAAAAGCTTTAGCGTATTTAGAACATGCTCTGAAATCGAAATCGGGTGACCCGAATGC 436 |||||||||||| || ||| | |||||||||||||||||||||||||||||||||||||| Sbjct 726 TGGAAAAGCTTTGGCTTATCTGGAACATGCTCTGAAATCGAAATCGGGTGACCCGAATGC 785 Query 437 CCGGATAGCTGATTACTTCGACGTAGCTTCCGGTTCCGGTATCGGAGGGATTTTCACGGC 496 || || |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 786 TCGAATCGCTGATTACTTCGACGTAGCTTCCGGTTCCGGTATCGGTGGGATTTTCACGGC 845 Query 497 GATGCTTTTCGCGTCGAGTGATGGTGACCGTCCGATCTTCAAAGCGGAAGACACGTGGCG 556 ||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 846 GATGCTTTTTGCGTCGAGCGATGGTAACCGTCCGATCTTCAAAGCGGAAGACACGTGGCG 905 Query 557 GTTTTTAGCTAAGAAAGGTAAAAGCTTTTACAACAAATCACCACCGGGGATACTAAACCG 616 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 906 GTTTTTAGCTATGAAAGGTAAAAGCTTTTACAACAAATCACCACCGGGGATACTAAACAG 965 Query 617 GGTTATGAAAACCGGGTCGGGTGGTTCGGGTGGGTCGGGTTCGAAGCTTGAGAAAGCGAT 676 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 966 GGTTATGAAAACCGGGTCGGGTGGTTCGGGTGGGTCAGGTTCGAAGCTTGAGAAAGCGAT 1025 Query 677 GAAGGAGTCGTTT-GAGGAGCTTACGCTTAAAGACACGCTCAAACCGGTTTTGATTCCTT 735 ||||||||| ||| || |||||||||||||| || ||||| ||||||||||||||||||| Sbjct 1026 GAAGGAGTC-TTTCGAAGAGCTTACGCTTAAGGATACGCTTAAACCGGTTTTGATTCCTT 1084 Query 736 GTTACGACCTTACGAGCTCTGCACCGTTCTTGTTTTCACGTGCTGATGCGTTGGAAACGG 795 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1085 GTTACGACCTCACGAGCTCTGCACCGTTCTTGTTCTCACGTGCTGATGCGTTGGAAACGG 1144 Query 796 ACGGTTATGATTTTAAGCTGTGGGAGGTTTGTAGAGCTACGTGGGCTGAGCCAGGAGTGT 855 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 1145 ACGGTTATGATTTTAAGCTGTGGGAAGTTTGTAGAGCTACTTGGGCTGAGCCAGGAGTGT 1204 Query 856 TTGAGCCGGTGGAGATGAGATCAGTTGATGGTAAAACGCGGTGTGTGGCGGTTGATGGTG 915 |||||||||||||||||||||||||||||||||| || |||||||| || |||||||||| Sbjct 1205 TTGAGCCGGTGGAGATGAGATCAGTTGATGGTAAGACACGGTGTGTAGCTGTTGATGGTG 1264 Query 916 GTTTAGCTATGAGTAATCCTACGGCTGCAGCAATTACTCATGTGTTGCATAACAAGCAAG 975 ||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||| Sbjct 1265 GTTTAGCAATGAGTAATCCAACGGCTGCAGCGATTACTCATGTGTTGCATAATAAGCAAG 1324 Query 976 AGTTTCCGTTTGTTAGAGGTGTTGAGGATTTGCTTGTGTTGTCACTTGGTACGGGACAGT 1035 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1325 AGTTTCCTTTTGTTAGAGGTGTTGAGGATTTGCTTGTGTTGTCACTTGGTACGGGACAGT 1384 Query 1036 TGGTTGATGTTAAGTATGATTGTGATAAGGTTCTGAAGTGGAAGGCTAAGCATTGGGCTC 1095 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1385 TGGTTGATGTTAAGTATGATTGTGATAAGGTTATGAAGTGGAAGGCTAAGCATTGGGCTC 1444 Query 1096 GGCCTGCGGTTCGGATTTCTGCTGATGGAGCGGCTGATACTGTGGATCAGGCTGTTTCCA 1155 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1445 GACCTGCGGTTCGGATTTCTGCTGATGGAGCAGCTGATACTGTGGATCAGGCTGTTTCCA 1504 Query 1156 TGGCGTTTGGTCAGTGTAGGAGGAGTAACTACGTCCGTATTCAGGCGAATGGATCAAGCT 1215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1505 TGGCGTTTGGTCAGTGTAGGAGGAGTAACTACGTCCGTATTCAGGCGAATGGATCAAGCT 1564 Query 1216 TTGGTCCGTGCAAACCAAACATAGACACAGATGCGAGTCCAAGCAATGTGAATATGCTTG 1275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1565 TTGGTCCGTGCAAACCAAACATAGACACAGATGCGAGTCCAAGCAATGTGAATATGCTTG 1624 Query 1276 TGGGAGTAGCAGAGGAGATGCTGAGGCAAAAGAACGCAGAGTCTGTTCTGTTTGGTGGTa 1335 |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| Sbjct 1625 TGGGAGTAGCAGAGGAGATGCTGAAGCAGAAGAATGCAGAGTCTGTTCTGTTTGGTGGTA 1684 Query 1336 aaaaaaTCAATGAAGAAAGCAATTATGAGAAGCTGGATTGGTTAGCCGGTGAACTCGTGC 1395 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1685 AGAAAATCAATGAAGAAAGCAATTATGAGAAGCTGGATTGGTTAGCCGGTGAACTAGTGC 1744 Query 1396 TCGAACACCAGAGGAGGAGTTGCAGAATCGCTCCCACTGTAGCGTTCAAGCAATCCGGCG 1455 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1745 TAGAACACCAGAGGAGGAGTTGTAGAATCGCTCCCACTGTAGCGTTCAAGCAATCCGGCG 1804 Query 1456 ACAGAAGAGTCGATCAACAGACCATTTTCAAGGATATTGATTGTATGTTTTGAAGATTTT 1515 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1805 ACAGAAGAGTCGATCAACAGACCATTTTCAAGGATATTGATTGTATGTTTTGAATATTTT 1864 Query 1516 TATATTGTATAGATTT 1531 || ||||||||||||| Sbjct 1865 TAAATTGTATAGATTT 1880 > AT3G54950.1 | Symbols: PLP7, PLA IIIA | patatin-like protein 6 | chr3:20358896-20361233 REVERSE LENGTH=2106 Length=2106 Score = 815 bits (441), Expect = 0.0 Identities = 938/1173 (80%), Gaps = 54/1173 (5%) Strand=Plus/Plus Query 302 GGGTTCAATTAAGAACCAGAGAGGTAAAGTTTGTGTTTTGAGTATCGATAGTGGTGGAAT 361 ||| || ||||||||||||||||||||| | ||| || ||||||||||| | |||||||| Sbjct 724 GGG-TCGATTAAGAACCAGAGAGGTAAAATCTGTATTCTGAGTATCGATGGAGGTGGAAT 782 Query 362 GAGAGGGAT-TATACCTGGAAAAGCTTTAGCGTATTTAGAACATGCTCTGAAATCGAAAT 420 ||||||||| | |||| || || ||||| || ||| ||||||| ||||||||||| |||| Sbjct 783 GAGAGGGATCT-TACCCGGTAAGGCTTTGGCTTATCTAGAACACGCTCTGAAATCTAAAT 841 Query 421 CGGGTGACCCGAATGCCCGGATAGCTGATTACTTCGACGTAGCTTCCGGTTCCGGTATCG 480 ||||||||||||||||||| || || |||||||| |||||||| |||| |||||||| | Sbjct 842 CGGGTGACCCGAATGCCCGAATCGCCGATTACTTTGACGTAGCCGCCGGGTCCGGTATAG 901 Query 481 GAGGGATTTTCACGGCGATGCTT-TTCGCGTCGAGTGATGGTGACCGTCCGATCTTCAAA 539 | ||||||| ||| || ||| || |||| ||| || || ||| |||| || ||||||||| Sbjct 902 GTGGGATTTACACAGCCATG-TTGTTCGGGTCAAGAGACGGTAACCGCCCCATCTTCAAA 960 Query 540 GCGGAAGACACGTGGCGGTTTTTAGCTAAGAAAGGTAAAAGCT-TTTACAACAAATCACC 598 || || |||||||||| ||| ||| | ||||| | || | | ||| || | | | Sbjct 961 GCAGATGACACGTGGCAGTTCTTAAC-GAGAAACGCCAAGGGTCTTT---ACGGAGGAGC 1016 Query 599 ACCGGGGATAC-T-AAACCGGGT-TATGAAAACCGGGTCGGGTGGTTCGGGT--GGGTCG 653 | || || | | ||| ||||| | ||| ||||||||||||| ||| | | ||| | Sbjct 1017 A---GGAAT-CTTGAAA-CGGGTCT-TGAGAACCGGGTCGGGTTGTT--GTTCCGGGAC- 1067 Query 654 GGTTCGAAGCTT-GAGAAAGCGATGAAGGAGTCGTTT-GAGGAGCTTACGCTTAAA-GAC 710 || | ||| || |||||| |||||| ||||| ||| |||||| || |||||| ||| Sbjct 1068 GG--CTAAG-TTAAAGAAAGTGATGAAAGAGTC-TTTCTCGGAGCTAAC-CTTAAAGGAC 1122 Query 711 ACGCTCAAACCGGT-TTTGATTCCTTGTTACGACCTTACGAGCTCT-GCACCG-TTCTTG 767 ||||| |||||||| || || ||||| |||||||| | |||||| || ||| ||| || Sbjct 1123 ACGCTTAAACCGGTGCTT-ATACCTTGCTACGACCTCAAAAGCTCTGGC-CCGTTTC-TG 1179 Query 768 TTTTCACGTGCTGATGCG-TTGGAAACGGACGGTTATGATTTTAAGCTGTGGGAGGTTTG 826 || ||||| || |||||| || || |||||||| |||||||||| ||| | ||||||||| Sbjct 1180 TTCTCACGGGCCGATGCGCTT-GAGACGGACGGCTATGATTTTAGGCTCTCGGAGGTTTG 1238 Query 827 TAGAGCTACGTGGGCTGAGCCAGGAGTGTTTGAGCCGGTGGAGATG-AGATCAGTTGATG 885 |||||| || ||||||||||| || ||||||||||| ||||||||| || || ||||||| Sbjct 1239 TAGAGCGACTTGGGCTGAGCCGGGTGTGTTTGAGCCCGTGGAGATGAAG-TCGGTTGATG 1297 Query 886 GTAAAACGC-GGTGTGTGGCGGTTGATGGTGGTTTAGCTATGAGTAATCCTACGGCTGCA 944 | | || | ||||||||| |||| ||| || ||||| ||||| ||||| || || || Sbjct 1298 GGCAGAC-CAAGTGTGTGGCTGTTGGTGGAGGATTAGCCATGAGCAATCCCACAGCGGCT 1356 Query 945 GCAATTACTCATGTGTTGCATAACAAGCAAGAGTTTCCGTTTGTTAGAGGTGTTGAGGAT 1004 ||||| || ||||| |||| |||||||| |||||||||||||| |||||||||||||| Sbjct 1357 GCAATCACGCATGTCCTGCACAACAAGCAGGAGTTTCCGTTTGTGCGAGGTGTTGAGGAT 1416 Query 1005 TTGCTTGTGTTGTCACTTGGTACGGGACAGTTGGTTGATGTTAAG-TATGATTGTGATAA 1063 |||||||||||||| ||||||| ||| |||||| ||||||||| | ||||| | |||| Sbjct 1417 TTGCTTGTGTTGTCTCTTGGTATGGGTCAGTTGCTTGATGTTA-GCTATGAGTATGATC- 1474 Query 1064 GG-TTCTGAAGTGGAAGGCTAAGCATTGGGCTCGGCCTGCGGTTCGGATTTCTGCTGATG 1122 || || | |||||||||||||||||||||||||| || || | || |||||| ||| | Sbjct 1475 GGATTATCAAGTGGAAGGCTAAGCATTGGGCTCGCCCCGCAGCTCTTATTTCTAATGACG 1534 Query 1123 GAGCGGCTGATACTGTGGATCAGGCTGTTTCCATGGCGTTTGGTCAGTGTAGGAGGAGTA 1182 | || ||||| ||||| ||||| ||||| ||||||| |||||||| || | || |||| Sbjct 1535 GTGCTGCTGACACTGTCGATCAAGCTGTGGCCATGGCTTTTGGTCACTGCCGCAGTAGTA 1594 Query 1183 ACTACGTCCGTATTCAGGCGAATGGATC-AAGCTTTGGTCCGTGCAAACCAAACATAGAC 1241 |||| ||||| |||||||||||||| || || ||| || || || | || ||||| ||| Sbjct 1595 ACTATGTCCGGATTCAGGCGAATGGGTCGAA-CTTAGGACCTTGGAGTCCTAACATGGAC 1653 Query 1242 ACAGATGCGAGTCCAAGCAATGTGAATATGCTTG-TGGGAGTAGCAGAGGAGATGCTGAG 1300 ||||| | ||| ||||||||||||||||| | |||||||||||||||||||||| | Sbjct 1654 ACAGACCCTAGTGGGAGCAATGTGAATATGCT-GATGGGAGTAGCAGAGGAGATGCTTAA 1712 Query 1301 GCAAAAGAACGCAGAGTCTGTTCTGTTTGGTGGTaaaaaaaTCAATGAAGAAAGCAA-TT 1359 |||||||| | || |||||| ||||||| ||||||| |||| ||||| | ||||| || Sbjct 1713 ACAAAAGAATGTTGAATCTGTTTTGTTTGGAGGTAAAAGAATCGATGAACAGAGCAACTT 1772 Query 1360 ATGAGAAGCTGGATTGGTTAGCCGGTGAACTCGTGCTCGAACACCAGAGGAGGAGTTGCA 1419 |||||||| || |||||||| || ||||| || ||||| || || ||||| | | ||| Sbjct 1773 C-GAGAAGCTTGACTGGTTAGCTGGGGAACTTGTTCTCGAGCATCAAAGGAGAAATAGCA 1831 Query 1420 GAATCGCTCCCACTGTAGCGTTCAAGCAATCCG 1452 |||||||||| || ||||||||||||||||||| Sbjct 1832 GAATCGCTCCAACCGTAGCGTTCAAGCAATCCG 1864 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75551820225 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5