BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934676
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39220.1 | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 |... 2427 0.0
AT3G54950.1 | Symbols: PLP7, PLA IIIA | patatin-like protein 6 ... 815 0.0
> AT2G39220.1 | Symbols: PLP6, PLA IIB | PATATIN-like protein 6
| chr2:16374896-16377020 REVERSE LENGTH=2016
Length=2016
Score = 2427 bits (1314), Expect = 0.0
Identities = 1449/1516 (96%), Gaps = 2/1516 (0%)
Strand=Plus/Plus
Query 17 TACGATGCAAAGAGTACACAGCAAGCCGATTGATTCTATCGGAGCTTTTAAGCATTTAAT 76
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| |
Sbjct 366 TACGATGCAAAGAGTACACAACAAACCGATTGATTCTATCGGAGGTTTTAAGCATTTGGT 425
Query 77 CAAACAGAGTAACGGCGGTGACGGTGGAGTGACGGTGGCGGATATGCAAGAACCGAGCAT 136
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 426 AAAACAGAGTAACGGCGGTGACGGTGGAGTGACGGCGACGGATATGCAAGAACCGAGCAT 485
Query 137 AGAGACGGATAAGCTTAGCTACGAGATTTTCTCGATTCTTGAAAGCAAGTTTCTTTTCGG 196
||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 486 CGAGACTGATAAGCTTAGCTACGAGATTTTCTCTATTCTCGAAAGCAAGTTTCTTTTCGG 545
Query 197 GTATGATGATGACCCGAAGCTTATGGAATCAAGGAGCAGAGACCCGAGTCCGGAGCAAGA 256
|||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 546 GTATGATGATGACCTGAAGCTTATGGAATCAAGAAGCAGAGACCCGAGTCCAGAGCAAGA 605
Query 257 AACAGCATCACCGGCGATGGTGGATGGTTTGAACGGCGTCGTTCCGGGTTCAATTAAGAA 316
||| |||||||||||||||||||| | ||| |||||||| ||||||||| || |||||||
Sbjct 606 AACGGCATCACCGGCGATGGTGGAAGCTTTAAACGGCGTTGTTCCGGGTACAGTTAAGAA 665
Query 317 CCAGAGAGGTAAAGTTTGTGTTTTGAGTATCGATAGTGGTGGAATGAGAGGGATTATACC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CCAGAGAGGTAAAGTTTGTGTTTTGAGTATCGATAGTGGTGGAATGAGAGGGATTATACC 725
Query 377 TGGAAAAGCTTTAGCGTATTTAGAACATGCTCTGAAATCGAAATCGGGTGACCCGAATGC 436
|||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 726 TGGAAAAGCTTTGGCTTATCTGGAACATGCTCTGAAATCGAAATCGGGTGACCCGAATGC 785
Query 437 CCGGATAGCTGATTACTTCGACGTAGCTTCCGGTTCCGGTATCGGAGGGATTTTCACGGC 496
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 786 TCGAATCGCTGATTACTTCGACGTAGCTTCCGGTTCCGGTATCGGTGGGATTTTCACGGC 845
Query 497 GATGCTTTTCGCGTCGAGTGATGGTGACCGTCCGATCTTCAAAGCGGAAGACACGTGGCG 556
||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 846 GATGCTTTTTGCGTCGAGCGATGGTAACCGTCCGATCTTCAAAGCGGAAGACACGTGGCG 905
Query 557 GTTTTTAGCTAAGAAAGGTAAAAGCTTTTACAACAAATCACCACCGGGGATACTAAACCG 616
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 906 GTTTTTAGCTATGAAAGGTAAAAGCTTTTACAACAAATCACCACCGGGGATACTAAACAG 965
Query 617 GGTTATGAAAACCGGGTCGGGTGGTTCGGGTGGGTCGGGTTCGAAGCTTGAGAAAGCGAT 676
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 966 GGTTATGAAAACCGGGTCGGGTGGTTCGGGTGGGTCAGGTTCGAAGCTTGAGAAAGCGAT 1025
Query 677 GAAGGAGTCGTTT-GAGGAGCTTACGCTTAAAGACACGCTCAAACCGGTTTTGATTCCTT 735
||||||||| ||| || |||||||||||||| || ||||| |||||||||||||||||||
Sbjct 1026 GAAGGAGTC-TTTCGAAGAGCTTACGCTTAAGGATACGCTTAAACCGGTTTTGATTCCTT 1084
Query 736 GTTACGACCTTACGAGCTCTGCACCGTTCTTGTTTTCACGTGCTGATGCGTTGGAAACGG 795
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1085 GTTACGACCTCACGAGCTCTGCACCGTTCTTGTTCTCACGTGCTGATGCGTTGGAAACGG 1144
Query 796 ACGGTTATGATTTTAAGCTGTGGGAGGTTTGTAGAGCTACGTGGGCTGAGCCAGGAGTGT 855
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1145 ACGGTTATGATTTTAAGCTGTGGGAAGTTTGTAGAGCTACTTGGGCTGAGCCAGGAGTGT 1204
Query 856 TTGAGCCGGTGGAGATGAGATCAGTTGATGGTAAAACGCGGTGTGTGGCGGTTGATGGTG 915
|||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||
Sbjct 1205 TTGAGCCGGTGGAGATGAGATCAGTTGATGGTAAGACACGGTGTGTAGCTGTTGATGGTG 1264
Query 916 GTTTAGCTATGAGTAATCCTACGGCTGCAGCAATTACTCATGTGTTGCATAACAAGCAAG 975
||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1265 GTTTAGCAATGAGTAATCCAACGGCTGCAGCGATTACTCATGTGTTGCATAATAAGCAAG 1324
Query 976 AGTTTCCGTTTGTTAGAGGTGTTGAGGATTTGCTTGTGTTGTCACTTGGTACGGGACAGT 1035
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 AGTTTCCTTTTGTTAGAGGTGTTGAGGATTTGCTTGTGTTGTCACTTGGTACGGGACAGT 1384
Query 1036 TGGTTGATGTTAAGTATGATTGTGATAAGGTTCTGAAGTGGAAGGCTAAGCATTGGGCTC 1095
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1385 TGGTTGATGTTAAGTATGATTGTGATAAGGTTATGAAGTGGAAGGCTAAGCATTGGGCTC 1444
Query 1096 GGCCTGCGGTTCGGATTTCTGCTGATGGAGCGGCTGATACTGTGGATCAGGCTGTTTCCA 1155
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1445 GACCTGCGGTTCGGATTTCTGCTGATGGAGCAGCTGATACTGTGGATCAGGCTGTTTCCA 1504
Query 1156 TGGCGTTTGGTCAGTGTAGGAGGAGTAACTACGTCCGTATTCAGGCGAATGGATCAAGCT 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 TGGCGTTTGGTCAGTGTAGGAGGAGTAACTACGTCCGTATTCAGGCGAATGGATCAAGCT 1564
Query 1216 TTGGTCCGTGCAAACCAAACATAGACACAGATGCGAGTCCAAGCAATGTGAATATGCTTG 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 TTGGTCCGTGCAAACCAAACATAGACACAGATGCGAGTCCAAGCAATGTGAATATGCTTG 1624
Query 1276 TGGGAGTAGCAGAGGAGATGCTGAGGCAAAAGAACGCAGAGTCTGTTCTGTTTGGTGGTa 1335
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct 1625 TGGGAGTAGCAGAGGAGATGCTGAAGCAGAAGAATGCAGAGTCTGTTCTGTTTGGTGGTA 1684
Query 1336 aaaaaaTCAATGAAGAAAGCAATTATGAGAAGCTGGATTGGTTAGCCGGTGAACTCGTGC 1395
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1685 AGAAAATCAATGAAGAAAGCAATTATGAGAAGCTGGATTGGTTAGCCGGTGAACTAGTGC 1744
Query 1396 TCGAACACCAGAGGAGGAGTTGCAGAATCGCTCCCACTGTAGCGTTCAAGCAATCCGGCG 1455
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1745 TAGAACACCAGAGGAGGAGTTGTAGAATCGCTCCCACTGTAGCGTTCAAGCAATCCGGCG 1804
Query 1456 ACAGAAGAGTCGATCAACAGACCATTTTCAAGGATATTGATTGTATGTTTTGAAGATTTT 1515
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1805 ACAGAAGAGTCGATCAACAGACCATTTTCAAGGATATTGATTGTATGTTTTGAATATTTT 1864
Query 1516 TATATTGTATAGATTT 1531
|| |||||||||||||
Sbjct 1865 TAAATTGTATAGATTT 1880
> AT3G54950.1 | Symbols: PLP7, PLA IIIA | patatin-like protein
6 | chr3:20358896-20361233 REVERSE LENGTH=2106
Length=2106
Score = 815 bits (441), Expect = 0.0
Identities = 938/1173 (80%), Gaps = 54/1173 (5%)
Strand=Plus/Plus
Query 302 GGGTTCAATTAAGAACCAGAGAGGTAAAGTTTGTGTTTTGAGTATCGATAGTGGTGGAAT 361
||| || ||||||||||||||||||||| | ||| || ||||||||||| | ||||||||
Sbjct 724 GGG-TCGATTAAGAACCAGAGAGGTAAAATCTGTATTCTGAGTATCGATGGAGGTGGAAT 782
Query 362 GAGAGGGAT-TATACCTGGAAAAGCTTTAGCGTATTTAGAACATGCTCTGAAATCGAAAT 420
||||||||| | |||| || || ||||| || ||| ||||||| ||||||||||| ||||
Sbjct 783 GAGAGGGATCT-TACCCGGTAAGGCTTTGGCTTATCTAGAACACGCTCTGAAATCTAAAT 841
Query 421 CGGGTGACCCGAATGCCCGGATAGCTGATTACTTCGACGTAGCTTCCGGTTCCGGTATCG 480
||||||||||||||||||| || || |||||||| |||||||| |||| |||||||| |
Sbjct 842 CGGGTGACCCGAATGCCCGAATCGCCGATTACTTTGACGTAGCCGCCGGGTCCGGTATAG 901
Query 481 GAGGGATTTTCACGGCGATGCTT-TTCGCGTCGAGTGATGGTGACCGTCCGATCTTCAAA 539
| ||||||| ||| || ||| || |||| ||| || || ||| |||| || |||||||||
Sbjct 902 GTGGGATTTACACAGCCATG-TTGTTCGGGTCAAGAGACGGTAACCGCCCCATCTTCAAA 960
Query 540 GCGGAAGACACGTGGCGGTTTTTAGCTAAGAAAGGTAAAAGCT-TTTACAACAAATCACC 598
|| || |||||||||| ||| ||| | ||||| | || | | ||| || | | |
Sbjct 961 GCAGATGACACGTGGCAGTTCTTAAC-GAGAAACGCCAAGGGTCTTT---ACGGAGGAGC 1016
Query 599 ACCGGGGATAC-T-AAACCGGGT-TATGAAAACCGGGTCGGGTGGTTCGGGT--GGGTCG 653
| || || | | ||| ||||| | ||| ||||||||||||| ||| | | ||| |
Sbjct 1017 A---GGAAT-CTTGAAA-CGGGTCT-TGAGAACCGGGTCGGGTTGTT--GTTCCGGGAC- 1067
Query 654 GGTTCGAAGCTT-GAGAAAGCGATGAAGGAGTCGTTT-GAGGAGCTTACGCTTAAA-GAC 710
|| | ||| || |||||| |||||| ||||| ||| |||||| || |||||| |||
Sbjct 1068 GG--CTAAG-TTAAAGAAAGTGATGAAAGAGTC-TTTCTCGGAGCTAAC-CTTAAAGGAC 1122
Query 711 ACGCTCAAACCGGT-TTTGATTCCTTGTTACGACCTTACGAGCTCT-GCACCG-TTCTTG 767
||||| |||||||| || || ||||| |||||||| | |||||| || ||| ||| ||
Sbjct 1123 ACGCTTAAACCGGTGCTT-ATACCTTGCTACGACCTCAAAAGCTCTGGC-CCGTTTC-TG 1179
Query 768 TTTTCACGTGCTGATGCG-TTGGAAACGGACGGTTATGATTTTAAGCTGTGGGAGGTTTG 826
|| ||||| || |||||| || || |||||||| |||||||||| ||| | |||||||||
Sbjct 1180 TTCTCACGGGCCGATGCGCTT-GAGACGGACGGCTATGATTTTAGGCTCTCGGAGGTTTG 1238
Query 827 TAGAGCTACGTGGGCTGAGCCAGGAGTGTTTGAGCCGGTGGAGATG-AGATCAGTTGATG 885
|||||| || ||||||||||| || ||||||||||| ||||||||| || || |||||||
Sbjct 1239 TAGAGCGACTTGGGCTGAGCCGGGTGTGTTTGAGCCCGTGGAGATGAAG-TCGGTTGATG 1297
Query 886 GTAAAACGC-GGTGTGTGGCGGTTGATGGTGGTTTAGCTATGAGTAATCCTACGGCTGCA 944
| | || | ||||||||| |||| ||| || ||||| ||||| ||||| || || ||
Sbjct 1298 GGCAGAC-CAAGTGTGTGGCTGTTGGTGGAGGATTAGCCATGAGCAATCCCACAGCGGCT 1356
Query 945 GCAATTACTCATGTGTTGCATAACAAGCAAGAGTTTCCGTTTGTTAGAGGTGTTGAGGAT 1004
||||| || ||||| |||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 1357 GCAATCACGCATGTCCTGCACAACAAGCAGGAGTTTCCGTTTGTGCGAGGTGTTGAGGAT 1416
Query 1005 TTGCTTGTGTTGTCACTTGGTACGGGACAGTTGGTTGATGTTAAG-TATGATTGTGATAA 1063
|||||||||||||| ||||||| ||| |||||| ||||||||| | ||||| | ||||
Sbjct 1417 TTGCTTGTGTTGTCTCTTGGTATGGGTCAGTTGCTTGATGTTA-GCTATGAGTATGATC- 1474
Query 1064 GG-TTCTGAAGTGGAAGGCTAAGCATTGGGCTCGGCCTGCGGTTCGGATTTCTGCTGATG 1122
|| || | |||||||||||||||||||||||||| || || | || |||||| ||| |
Sbjct 1475 GGATTATCAAGTGGAAGGCTAAGCATTGGGCTCGCCCCGCAGCTCTTATTTCTAATGACG 1534
Query 1123 GAGCGGCTGATACTGTGGATCAGGCTGTTTCCATGGCGTTTGGTCAGTGTAGGAGGAGTA 1182
| || ||||| ||||| ||||| ||||| ||||||| |||||||| || | || ||||
Sbjct 1535 GTGCTGCTGACACTGTCGATCAAGCTGTGGCCATGGCTTTTGGTCACTGCCGCAGTAGTA 1594
Query 1183 ACTACGTCCGTATTCAGGCGAATGGATC-AAGCTTTGGTCCGTGCAAACCAAACATAGAC 1241
|||| ||||| |||||||||||||| || || ||| || || || | || ||||| |||
Sbjct 1595 ACTATGTCCGGATTCAGGCGAATGGGTCGAA-CTTAGGACCTTGGAGTCCTAACATGGAC 1653
Query 1242 ACAGATGCGAGTCCAAGCAATGTGAATATGCTTG-TGGGAGTAGCAGAGGAGATGCTGAG 1300
||||| | ||| ||||||||||||||||| | |||||||||||||||||||||| |
Sbjct 1654 ACAGACCCTAGTGGGAGCAATGTGAATATGCT-GATGGGAGTAGCAGAGGAGATGCTTAA 1712
Query 1301 GCAAAAGAACGCAGAGTCTGTTCTGTTTGGTGGTaaaaaaaTCAATGAAGAAAGCAA-TT 1359
|||||||| | || |||||| ||||||| ||||||| |||| ||||| | ||||| ||
Sbjct 1713 ACAAAAGAATGTTGAATCTGTTTTGTTTGGAGGTAAAAGAATCGATGAACAGAGCAACTT 1772
Query 1360 ATGAGAAGCTGGATTGGTTAGCCGGTGAACTCGTGCTCGAACACCAGAGGAGGAGTTGCA 1419
|||||||| || |||||||| || ||||| || ||||| || || ||||| | | |||
Sbjct 1773 C-GAGAAGCTTGACTGGTTAGCTGGGGAACTTGTTCTCGAGCATCAAAGGAGAAATAGCA 1831
Query 1420 GAATCGCTCCCACTGTAGCGTTCAAGCAATCCG 1452
|||||||||| || |||||||||||||||||||
Sbjct 1832 GAATCGCTCCAACCGTAGCGTTCAAGCAATCCG 1864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75551820225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5