BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934677
Length=2654
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:1638... 3962 0.0
AT3G54980.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1271 0.0
> AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381647-16384250
FORWARD LENGTH=2604
Length=2604
Score = 3962 bits (2145), Expect = 0.0
Identities = 2460/2613 (94%), Gaps = 18/2613 (1%)
Strand=Plus/Plus
Query 26 ATGAGTACTTTCGTGGCTTCCAAACGATTCCGTCCACCTCTTTTTCTCCATCGTTTGATA 85
|||| ||||||| ||| |||||||||||| ||||||||| |||||||||||||||| |||
Sbjct 1 ATGACTACTTTCATGGTTTCCAAACGATTTCGTCCACCTATTTTTCTCCATCGTTTTATA 60
Query 86 AACCCTAAACCCATTTCTTCACAGTA-TCGATTTCTCCATCCACCGGATAATCAAAGTCG 144
|| || |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 61 AATCCAAAACCCATTTCTTCACAG-ACTCGATTTCTCCATCCACCGGATAATCAAAGTCG 119
Query 145 AGACATTTCCGATTCTACCACTGAAGTCTTCTCAGA-ACTAGAATTTCCTCATAAAGCCT 203
||||||||||||||| || |||||| | ||||| | ||||||||||||||||||| |||
Sbjct 120 AGACATTTCCGATTCCACTACTGAAACCATCTCA-ACACTAGAATTTCCTCATAAAACCT 178
Query 204 CTGGACCAAATCATTCACCTTTAATTTCAACCTCTGAGACTGACAATCATGTGGACGACG 263
||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 179 CTGTACCAAATCATTCACCTTTAACTTCAACCTCTGAGACTGAGAATCATGTGGACGACG 238
Query 264 CTCATGTAATCGAAGTGCTTCTAGGTCGTAGAAACGACCCAGTCTCAGCTCTTCAATACT 323
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 CTCGTGTAATCGAAGTGCTTCTAGGTCGTAGAAACGACCCAGTCTCAGCTCTTCAGTACT 298
Query 324 GCAATTGGGTCAAGCCTTTACGTAGTCTCTGTGAAGGTGGAGATGTCTTCTGGGTACTCA 383
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 299 GCAATTGGGTCAAGCCTTTACATCGTCTCTGTGAAGGTGGAGATGTCTTCTGGGTACTTA 358
Query 384 TTCATATTCTCTT-T-AGCTCTCCTCACACTCACGATCGTGCCAGCAATTTGCTCGTAAT 441
|||||| || ||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 359 TTCATA-TC-CTTCTAAGCTCTATTCACACTCACGATCGTGCCAGCAATTTGCTCGTAAT 416
Query 442 GTTCGTTTC-AAGCAATCCAACGCTAATTCCAAGCGCAATGGTTAACAATTTGGTTGATT 500
||||||||| || |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 417 GTTCGTTTCGAA-CAATCCAACGCTAATTCCAAACGTAATGGTTAACAATTTGGTTGATT 475
Query 501 CGTCTAAAAGGTTTGATTTTGAACTTAGCTCACGAGCTTTCAATTACTTGTTGAATGCTT 560
|||||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 476 CGTCTAAACGGTTTGGTTTTGAACTTACCCCACGAGCTTTCAATTACTTGTTGAATGCTT 535
Query 561 ATATTCGAAATAGGCGAATGGATTATGCTGTAGATTGCTTTAATTTGATGGTGGATCGAA 620
|||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 536 ATATTCGAAACAAGCGAATGGATTATGCTGTAGATTGCTTTGGTTTGATGGTGGATCGAA 595
Query 621 ATGTGGTTCCTTTTGTTCCATATGTGAACAATGTTTTAAGCTCTTTAGTTCGAAGTAATT 680
| || ||||||||||| |||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 596 AGGTTGTTCCTTTTGTGCCATATGTGAACAATGTTCTAAGTTCTTTAGTTAGAAGTAATT 655
Query 681 TGATAGATGAAGCTAAGGAGATTTATAATAAGATGGTTTTGATTGGTGTTGCTGGTGATA 740
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 656 TGATAGATGAAGCTAAGGAGATTTATAATAAGATGGTTTTAATTGGTGTTGCTGGTGATA 715
Query 741 ATGTTACGACGCAGTTGTTGATGCGAGCTAGTTTGAGAGAGCGAAAGCCCGAAGAGGCTG 800
|||| || || |||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 716 ATGTAACTACACAGTTGTTGATGCGAGCTAGTTTGAGAGAGAGGAAGCCTGAAGAGGCTG 775
Query 801 TGAAAATTTTCAGAAGAGTTATGAGTAGAGGAGCAGAACCAGATGGTTTGTTGTTTAGTC 860
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGAAAATTTTCAGGAGAGTTATGAGTAGAGGAGCAGAACCAGATGGTTTGTTGTTTAGTC 835
Query 861 TTGCTGTTCAAGCTGCTTGTAAGATG-AAGGATTTGGTTATGGCTTTGGATTTGTTGAGA 919
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 836 TTGCTGTTCAAGCTGCTTGTAAGACGCCA-GATTTGGTTATGGCTTTGGATTTGTTGAGG 894
Query 920 GAAATGAGGGAGAAGGGAGGTGTCCCGGCCTCGCAGGAAACGTATACTAGTGTGATTGTG 979
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GAAATGAGGGGGAAGTTAGGTGTCCCGGCCTCGCAGGAAACGTATACTAGTGTGATTGTG 954
Query 980 GCTTGTGTGAAGGAAGGTAATATGGAGGAGGCGGTGAAGGTTAAGGATGAGATGGTTGGT 1039
|||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 955 GCTTTTGTGAAGGAAGGTAATATGGAGGAGGCAGTGAGGGTTATGGATGAGATGGTTGGT 1014
Query 1040 TTTGGGATACCGATGAGTGTTATTGCTGCAACGAGTTTGATTACTGGATTTTGCAATGGG 1099
|||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||| |||
Sbjct 1015 TTTGGGATACCGATGAGTGTAATTGCTGCAACGAGTTTGGTTAATGGATATTGCAAGGGG 1074
Query 1100 AATGAGTTGGGTAAGGCTTTGGATTTCTTTAATAGAATGGAGGAGGAAGGGCTGGCTCCG 1159
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1075 AATGAGTTAGGTAAGGCTTTGGATTTGTTTAATAGAATGGAGGAGGAAGGGCTGGCTCCG 1134
Query 1160 GACAAAGTTATGTTTTCGGTTATGATCGAATGGTTTTGTAAGAATATGGAGATGGAGAAA 1219
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1135 GACAAAGTTATGTTTTCGGTTATGGTCGAATGGTTTTGTAAGAATATGGAGATGGAGAAA 1194
Query 1220 GCTGTTGAGATTTACAAGCGGATGAAATCTGTAGGGATTGCTCCTTCATCTGTTCTTGTC 1279
||| ||||| |||| | | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1195 GCTATTGAGTTTTATATGAGGATGAAATCTGTAAGGATTGCTCCTTCATCTGTTCTTGTC 1254
Query 1280 CACACAATGATCCAAGGATGTTTGAAAGCTGAGTCACCAGAAGCGGCGCTAGAAATCTTT 1339
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CATACAATGATCCAAGGGTGTTTGAAAGCTGAGTCACCAGAAGCGGCGCTAGAAATCTTT 1314
Query 1340 AACGACAGTTTTGAAACCTGGATTGCGCACGGTTTCATGTGTAACAAGATTTTCTTATTG 1399
|||||||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1315 AACGACAGTTTTGAAAGCTGGATTGCGCATGGTTTTATGTGTAACAAGATTTTTTTATTG 1374
Query 1400 TTATGCAAGCAAGGTAAGGTCGATGCTGCGACAAGCTTTTTGAGGATGATGGA-AAACAA 1458
|| |||||||||||||| ||||||||||| ||||||||||||| ||||||||| || ||
Sbjct 1375 TTTTGCAAGCAAGGTAAAGTCGATGCTGCAACAAGCTTTTTGAAGATGATGGAGCAA-AA 1433
Query 1459 AGGGATTGAGCCGAATGTAGTTTTTTACAATAACATGATGCTTGCTCATTGCAGAATGAA 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 AGGGATTGAGCCGAATGTAGTTTTTTACAATAACATGATGCTTGCTCATTGCAGAATGAA 1493
Query 1519 AAACATGGACTTGGCTCGTTCAATATTTTCGGAAATGCTGGAAAAGGGTCTACAACCGAA 1578
|||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 1494 AAACATGGACTTGGCTCGTTCAATATTTTCTGAAATGCTGGAAAAGGGTCTAGAGCCGAA 1553
Query 1579 TAACTTCACTTATTCCATCTTGATTGATGGATTTTTCAAGAATCAAG-ATGAACAGAATG 1637
|||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct 1554 TAACTTCACTTATTCCATCTTGATCGATGGATTTTTCAAGAAT-AAGGATGAACAGAATG 1612
Query 1638 CTTGGGAAGTCATCAATCAGATGATTGCTTCCAATTTCGAAGCTAATGAAGTCATATATA 1697
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1613 CTTGGGATGTCATCAATCAGATGAATGCTTCCAATTTCGAAGCTAATGAAGTCATATATA 1672
Query 1698 ATACGATCATCAATGGTTTGTGCAAAGTTGGTCAGACATTTAAAGCCAAAGAGATGTTGC 1757
|||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 1673 ATACGATCATCAATGGTTTGTGTAAAGTTGGTCAGACGTCTAAAGCCAAAGAGATGTTGC 1732
Query 1758 AAAATTTGATAAAAGAAAAGCGCTATTCCATGGGTTGCACGAGTTACAATAGCATTATAG 1817
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1733 AAAATTTGATCAAAGAAAAGCGCTATTCCATGAGTTGCACGAGTTACAATAGCATCATAG 1792
Query 1818 ATGGATTTTTCAAAGAAGGTGACACCGATTCTGCTGTAGAAGCTTACAGAGAGATGAGTG 1877
||||||| |||||| |||||| || ||||| ||||| ||| ||||||||||||||||||
Sbjct 1793 ATGGATTCGTCAAAGTAGGTGATACTGATTCCGCTGTCGAAACTTACAGAGAGATGAGTG 1852
Query 1878 AAAACGGTATATCCCCAAATGTTGTAACCTTCACCAGCTTGATCAATGGATTCTGCAAAA 1937
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 AAAACGGTAAATCTCCAAATGTTGTAACCTTCACCAGCTTGATCAATGGATTCTGCAAAA 1912
Query 1938 GTAACAGAATGGATCTAGCTCTTGAAATGATACACGAAATGAAAAGCAAGGATTTGAAAC 1997
||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 1913 GTAACCGAATGGATCTAGCTCTTGAAATGACACACGAAATGAAAAGCATGGAGTTGAAAC 1972
Query 1998 TTGATGTTCCAGCCTACGGTGCACTAATAGACGGGTTCTGTAAAAAGCATGACATGAAAA 2057
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1973 TTGATCTTCCAGCCTACGGTGCACTAATAGACGGGTTCTGTAAAAAGAATGACATGAAAA 2032
Query 2058 CCGCATATACTCTGTTCTCTGAACTGCTGGAACTAGGATTGATGCCAAATGTGTCTGTCT 2117
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2033 CCGCATATACTTTGTTCTCTGAACTGCCGGAACTAGGATTGATGCCAAATGTGTCTGTCT 2092
Query 2118 ACAATAATTTGATTTCAGGATTCCGTAATCTGGGAAAGATGGATGCAGCAATTGACTTGT 2177
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2093 ACAATAGTTTGATTTCAGGATTCCGTAATCTGGGAAAGATGGATGCAGCGATTGACTTGT 2152
Query 2178 ACAAGAAAATGGTGAATGACGGGATAAGTTGTGATCTGTTTACATATACAACGATGATCG 2237
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2153 ACAAGAAAATGGTGAATGATGGAATAAGTTGTGATCTGTTTACATATACAACGATGATCG 2212
Query 2238 ATGGGTTGTTAAAAGACGGAAATCTAATTCTTGCCTCTGATTTGTACTCGGAGTTGCTTG 2297
| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 2213 ACGGGTTGTTAAAAGATGGAAATATAAATCTTGCCTCTGATTTGTACTCGGAGTTGCTTG 2272
Query 2298 CTTTGGGTATTGTCCCTGATGAAATTCT-GTACGTGGTACTTGTCAACGGTCTTAGTAAG 2356
||| |||||||||||||||||||| || | || ||||||||||||||||||||||||||
Sbjct 2273 ATTTAGGTATTGTCCCTGATGAAAT-CTTGCACATGGTACTTGTCAACGGTCTTAGTAAG 2331
Query 2357 AAGGGACAGTTTGTGAGAGCAAGCAAGATGTTAGAGGAGATGAAGAAGAAAGATGCGACT 2416
|||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 2332 AAGGGACAGTTTTTGAAAGCTAGCAAGATGTTAGAGGAGATGAAGAAGAAAGATGTGACT 2391
Query 2417 CCAAATGTGCTTATATACAGTACTGTTATCGCAGGACATCACAGAGAAGGAAATCTCAAT 2476
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2392 CCAAATGTGCTTCTATACAGTACTGTTATTGCAGGACATCATAGAGAAGGAAATCTCAAT 2451
Query 2477 GAGGCTTTTAGACTTCATGATGAGATGCTTGAGAAAGGTCTTGTACATGATGATACTATA 2536
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2452 GAGGCTTTTAGACTTCATGATGAGATGCTTGAGAAAGGTATTGTACATGATGATACTGTA 2511
Query 2537 TTCAATTTACTCGTGAGTGGAAGAGTTGAGAAACCTCCTGCTGCAGCCAAGATTAGTAGC 2596
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2512 TTCAATTTACTCGTGAGTGGAAGAGTTGAGAAACCTCCTGCTGCATCCAAGATTAGTAGC 2571
Query 2597 TTGGCTTCTCCTGAGATGAGATCGAGCTACTAA 2629
|||||||||||||||||||||||||||||||||
Sbjct 2572 TTGGCTTCTCCTGAGATGAGATCGAGCTACTAA 2604
> AT3G54980.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:20370234-20373069 FORWARD LENGTH=2836
Length=2836
Score = 1271 bits (688), Expect = 0.0
Identities = 1849/2393 (77%), Gaps = 146/2393 (6%)
Strand=Plus/Plus
Query 256 GGACGACGC-TCATGTAATCGAAGTGCTTCT-AGGTCGTAGAAACGACCCAGTCTCAGCT 313
|||||| || || ||||||||| || ||||| | ||| || ||| |||||| | |||
Sbjct 269 GGACGATGCATC-TGTAATCGATGTTCTTCTCA-ATCGCAGGAACAACCCAGAAGCTGCT 326
Query 314 CTTCAATACTGCAATTGGGTCAAG-CCTTTACGT---AGTCTCTGTGAAGGTGGAGATGT 369
|||| | || ||||||| | || || | ||| ||| | | ||||| ||| || ||
Sbjct 327 CTTCGTTTCTATAATTGGG-CTAGACCATGGCGTGGAAGT-T-T-TGAAGATGGTGACGT 382
Query 370 CTTCTGGGTACTCATTCATATTCTCTTTAGCTCTCCTCACA-CTCA-CGATCGTGCCAGC 427
|||||||||||||||||||||||| | || |||||| | | || | || ||||| ||
Sbjct 383 CTTCTGGGTACTCATTCATATTCTGGTCAGTTCTCCTGAGACCT-ATGGA-CGTGCAAGT 440
Query 428 AATTTGCTCGTAATGTTCGTTTC-A--AGCAATCCAACGCTAATTCCAAGCGCAATGGTT 484
|||||||| || || |||||| | ||||||||||| | ||| |||| | ||||
Sbjct 441 GATTTGCTCATACGGTACGTTTCTACGAGCAATCCAACTCCAATGGCAAGTGTTTTGGTC 500
Query 485 AACAATTTGGTTGATTCGTCTAAAAGGTTTGATTTTGAACTTAGCTCACGAGCTTTCAAT 544
| || ||||| |||||| | ||| |||| |||||| | | ||||||||||| |||
Sbjct 501 AGTAAATTGGTGGATTCGGCGAAATCATTTGGGTTTGAAGTCAATTCACGAGCTTTTAAT 560
Query 545 TACTTGTTGAATGCTTATATTC-GAA-ATAGGCGAATGGATTATGCTGTAGAT-TGCTTT 601
||||| |||||||| | ||||| || |||||| || |||| |||| || ||| | | |
Sbjct 561 TACTTATTGAATGC-T-TATTCTAAAGATAGGCAAACGGATCATGCGGTGGATAT-CGTC 617
Query 602 AATTTGATGGTGGATCGAAATGTGGTTCC-TTTTGTTCCATATGTGAACAATG-TTTTAA 659
|| |||| |||| | | ||||| |||| |||| ||||||||||||| | | || |
Sbjct 618 AACCAGATGTTGGAACTAGATGTGATTCCATTTT-TTCCATATGTGAA-TAGGACCTTGA 675
Query 660 GCT-CTTTAGTTCGAAGTAATTTGATAGA-TGAAGCTAAGGAGA-TTTATAATAAGATGG 716
| | ||||||||| ||| |||| | || | |||||||||||| | | || | || |||||
Sbjct 676 G-TGCTTTAGTTCAAAGGAATTCGTTA-ACTGAAGCTAAGGA-ACTCTACAGTAGGATGG 732
Query 717 TTTTGATTGGTGTTGCTGGTGATAATGTTACGACGCAGTTGTTGATGCGAGCTAGTTTGA 776
|| |||||||||| |||||||||||| || ||||| ||||| ||| ||||||||||||
Sbjct 733 TTGCCATTGGTGTTGATGGTGATAATGTAACAACGCAATTGTTAATGAGAGCTAGTTTGA 792
Query 777 GAG-AGCGAAAGCCCGAAGAGGCTGTGAAAATTTTCAGAAGAGTTA-TGAGTAGAGGAGC 834
||| || |||||| | |||||| || | |||| || |||| || |||| ||||||||
Sbjct 793 GAGAAG-AAAAGCCTGCGGAGGCTTTGGAGGTTTTAAGTAGAGCTATTGAG-AGAGGAGC 850
Query 835 AGAACCAGATGGTTTGTTGTTTAGTCTTGCTGTTCAAGC-TGCTTGTAAGATGAAGGATT 893
|||||| ||| |||| ||| ||||||||||||||| || || ||| |||| | ||||
Sbjct 851 AGAACCGGATAGTTTACTGTATAGTCTTGCTGTTCAGGCTTG-TTGCAAGACGCTTGATT 909
Query 894 TGGTTATGGCT-TTGGATTTGTTGAGAGAAATGAGGGAGAAG--GGAG-GTGTCCCGGCC 949
||| ||||||| | | ||| |||||||| |||| ||||||| | | ||||||| |
Sbjct 910 TGGCTATGGCTAATAG-TTTATTGAGAGAGATGAAGGAGAAGAAGTTGTGTGTCCC-G-- 965
Query 950 TCGCAGGAAACGTATACTAGTGTGATTGTGGCTTGTGTGAAGGAAGGTAATATGGAGGAG 1009
||||||||||| |||||| ||||||| |||||| ||||||| ||||||||||||| ||
Sbjct 966 TCGCAGGAAACTTATACTTCTGTGATTTTGGCTTCTGTGAAGCAAGGTAATATGGATGAT 1025
Query 1010 GCGGTGAAGGTT-AAGGATGAGATGGTTG-GTTTTGGGATACCGATGAGTGTTA-TTGCT 1066
|| | || || ||||||||||| |||| || ||||||| |||||| || || |||||
Sbjct 1026 GCAAT-TAGATTGAAGGATGAGAT-GTTGAGTGATGGGATATCGATGAATG-TAGTTGCT 1082
Query 1067 GCAACGAGTTTGATTACTGGATTTTGCAATG-GGAATGAGTTGGGTAAG-GCTTTGGATT 1124
|| |||||| |||| || ||| ||||| | ||||| || ||| || ||||||| ||
Sbjct 1083 GCGACGAGTCTGATCACGGGACACTGCAA-GAACAATGACTT-GGTTAGTGCTTTGGTTT 1140
Query 1125 TCTTTAAT-AGAATGGAGGAGGAAGGGCTGGCTCCGGACAAAGTTA-TGTTTTCGGTTAT 1182
| ||| || || ||||| ||||||| | ||||| ||| |||| | ||||||||| |
Sbjct 1141 TGTTTGATAAG-ATGGAAAAGGAAGGCCCCTCTCCGAACAGCGTTACT-TTTTCGGTTCT 1198
Query 1183 GATCGAATGGTTTTGTAAGAATATGGAGATGGAGAAA-GCTG-TTGAGA-TTTACAAGCG 1239
||| ||||||||| ||||||| ||| ||||| ||| || | |||| | ||||||||
Sbjct 1199 GATAGAATGGTTTCGTAAGAACGGGGAAATGGA-AAAGGC-GCTTGA-ATTTTACAAGAA 1255
Query 1240 GAT-GAAATCTGTAGGGATTGCTCCTTC-ATCTGTTCTTGTCCACACAATGATCCAAGGA 1297
|| ||| ||| |||| || ||||||| ||| ||| ||||||||| || || |||||
Sbjct 1256 AATGGAAGTCT-TAGGTCTTACTCCTTCTGTCT-TTCATGTCCACACGATAATTCAAGGG 1313
Query 1298 TGTTTGAAAGCTGAGTCACCA-GAAGCGGCGCTAGAAA-TCTTTAACGACAGTTTTGAAA 1355
|| ||||||| | || | || |||| ||| || |||| ||||| |||| ||||||||
Sbjct 1314 TGGTTGAAAGGTCAG-AAACATGAAGAGGCACT-GAAACTCTTTGACGAGTCTTTTGAAA 1371
Query 1356 CCTGG-ATTGCGCACG-GTTTCATGTGTAACAAGATTTTCTTATTGTTATGCAAGCAAGG 1413
|| || |||| ||| |||| | ||||||| || || | | |||||||||||||||
Sbjct 1372 CC-GGTCTTGCAAACGTGTTT-GTATGTAACACTATATTATCCTGGTTATGCAAGCAAGG 1429
Query 1414 TAAGGTC-GATGCTGCGACA-AGCTTTTTGAGGATGATGGAAAACAAAGGGATT-GAGCC 1470
||| | | || | || ||| || || || || | |||||||| | ||| ||| || ||
Sbjct 1430 TAA-GACAGACGAAGCTACAGAG-TTATTAAGCAAGATGGAAAGTAGAGGTATTGGA-CC 1486
Query 1471 GAATGTAGTTTTTTACAATAACATGATGCTT-GCTCATTGCAGA-ATGAAAAACATGGAC 1528
||||||||||| |||||||||| |||||||| || || |||||| | |||||||||||||
Sbjct 1487 GAATGTAGTTTCTTACAATAACGTGATGCTTGGC-CACTGCAGACA-GAAAAACATGGAC 1544
Query 1529 TTGGCTCGT-TCAATATTTTCGGAA-ATGCTGGAAAAGGGTCTACAA-CCGAATAACTTC 1585
||||||||| | | ||||| || || ||||||||||||||| || |||||||||| |
Sbjct 1545 TTGGCTCGTAT-TGTTTTTTC-AAATATACTGGAAAAGGGTCTA-AAGCCGAATAACTAC 1601
Query 1586 ACTTATTCCA-TCTTGATTGATGGATTTTTCAAGAATCAAGATGAACAGAATGCTTGGGA 1644
|| ||||||| || |||||||||||| ||||| |||||| |||||||| || |||| |||
Sbjct 1602 ACGTATTCCATTC-TGATTGATGGATGTTTCAGGAATCATGATGAACAAAACGCTTTGGA 1660
Query 1645 AGTCATCAATCAGATGA-TTGCTTCCAAT-TTCGAAGCT-AATGAAGTCATATA-TAATA 1700
|||| ||||||| |||| || |||||||| || |||| | || | || |||| || |
Sbjct 1661 AGTCGTCAATCATATGACTT-CTTCCAATATT-GAAG-TCAACGGGGTTGTATACCAA-A 1716
Query 1701 CGATCATCAATGGTTTGTGCAAAGTTGGTCAGACATTTAAAGCCAAAGAG-A-TGTT-GC 1757
| || ||||||||||| ||||||||||||||||||| |||| | ||||| | |||| ||
Sbjct 1717 CAATTATCAATGGTTTATGCAAAGTTGGTCAGACATCCAAAG-C-AAGAGAATTGTTGGC 1774
Query 1758 AAAATTTGATAAAAGAAAAGC-GCTATTCCATGGGTTGCACGAGTTACAATAGCATTATA 1816
|||| |||| ||||||| | | || | | |||||| |||||||||||||||||||
Sbjct 1775 -AAATATGATCGAAGAAAAACGGTTA-TGTGTTAGTTGCATGAGTTACAATAGCATTATA 1832
Query 1817 GATGGATTTTTCAAAGAAGGTGACACCGATTCTGCTGTAGAAGCTTACAGA-GAGATGAG 1875
||||||||||||||||| ||||| | |||||||| || | ||| ||| || |||||| |
Sbjct 1833 GATGGATTTTTCAAAGAGGGTGAAATGGATTCTGCGGTTGCAGCATAC-GAAGAGATGTG 1891
Query 1876 TGAAAACGGTATATCCCCAAATGTTGTAACCT-TCACCAGCTTGATCAATGGATTCTGCA 1934
|| || ||||| || ||||| || |||| | | ||||||||||| ||||| || ||||
Sbjct 1892 TGGCAATGGTATTTCTCCAAACGTCATAACTTAT-ACCAGCTTGATGAATGGGTTATGCA 1950
Query 1935 AAAGTAACAGAATGGATCTAGCTCTTG-AAATGATACACGAAATGAA-AAGCAA-GGATT 1991
||| |||||||||||||| ||| ||| |||||| | |||||||||| || ||| || |
Sbjct 1951 AAAATAACAGAATGGATCAAGCA-TTGGAAATGAGAGACGAAATGAAGAA-CAAAGG-TG 2007
Query 1992 TGAAACTTGATGTTCCAGCCTACGGTGCACTAATAGACGGGTTCTGTAAAAAGCA-TGAC 2050
| ||||| ||| |||||||||| ||||| || || || |||||||| |||| | | | ||
Sbjct 2008 TCAAACTCGATATTCCAGCCTATGGTGCTCTTATCGATGGGTTCTGCAAAAGG-AGTAAC 2066
Query 2051 ATGAAAACCGCATATACTCTGTTCTCTGAACTGCTGGAACTAGGATTGA-TGCCAAATGT 2109
||| ||| ||||| | |||||||||||||||| || ||| |||||||| | ||||
Sbjct 2067 ATGGAAAGCGCATCTGCTCTGTTCTCTGAACTCCTTGAAGAAGGATTGAAT-CCAAGCCA 2125
Query 2110 GTCTGTCTACAATAATTTGATTTCAGGATTCCGTAATCTGGGAAAGATGG-ATGCAGCAA 2168
|| | ||||| | |||||||| ||||| |||||||||||||| |||| | |||||
Sbjct 2126 ACCTATATACAACAGCTTGATTTCTGGATTTCGTAATCTGGGAAACATGGTA-GCAGCCC 2184
Query 2169 TTGACTTGTACAAGAAAATGGTGAATGACGGGATAAGTTGTGATCTGTTTACATATACAA 2228
|||| ||||||||||||||| |||| ||||| || | ||||||||| |||||||||||
Sbjct 2185 TTGATTTGTACAAGAAAATGTTGAAAGACGGTCTACGATGTGATCTGGGTACATATACAA 2244
Query 2229 CGA-TGATCGATGGGTTGTTAAAAGACGGAAATCTAATTCTTGCCTCTGATTTGTACTCG 2287
| | |||| ||||| ||||| ||||| |||||| | || || |||||||| |||||| |
Sbjct 2245 C-ACTGATTGATGGATTGTTGAAAGATGGAAATTTGATCCTGGCCTCTGAGTTGTACACA 2303
Query 2288 GAGTTGCTTGCTTTGGGTATTGTCCCTGATGAAATTC-TGTACGTGGTACTTGTCAACGG 2346
|| ||| || ||||| |||||||||||||||| | | ||| ||| |||| |||||
Sbjct 2304 GAAATGCAGGCGGTGGGTCTTGTCCCTGATGAAAT-CATTTACACAGTAATTGTAAACGG 2362
Query 2347 TCTTAGTAAGAAGGGACAGTTTGTGAGAGCAAGC-AAGATGTTAGAGGAGATGAAGAAGA 2405
|||||| |||||||| |||||||| | || | |||||||| ||||||||||||||||
Sbjct 2363 TCTTAGCAAGAAGGGGCAGTTTGTAAAAGTG-GTTAAGATGTTTGAGGAGATGAAGAAGA 2421
Query 2406 A-AGATG-CGACTCCAAATGTGCTTATATACAGTACTGTTATCGCAGGACATCACAGAGA 2463
| | ||| | ||||| ||||| ||||| |||| | || || || |||||| | |||||
Sbjct 2422 ATA-ATGTC-ACTCCGAATGTCCTTATCTACAACGCGGTGATTGCCGGACATTATAGAGA 2479
Query 2464 AGGAAATCTCAATGAGGCTTTTAGACTTCATGATGAGATGCTTGAGAAAGGTCTTGTACA 2523
|||||||||| ||||||||||||||||||| |||||||||||||| || ||| || |||
Sbjct 2480 AGGAAATCTCGATGAGGCTTTTAGACTTCACGATGAGATGCTTGACAAGGGTATTTTACC 2539
Query 2524 TGATGATACTATATTCAAT-TTACTCGTGAGTGGA-AGAGTTGAGAAACCTCC 2574
|||| | ||| ||| || || || || ||||| | ||| | |||||||||
Sbjct 2540 CGATGGTGCTACATTTGATATT-CTAGTTAGTGGGCA-AGTCG-GAAACCTCC 2589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131788559261
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5