BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934693
Length=2483
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39360.1 | Symbols: | Protein kinase superfamily protein | ... 3663 0.0
> AT2G39360.1 | Symbols: | Protein kinase superfamily protein
| chr2:16437472-16440154 REVERSE LENGTH=2683
Length=2683
Score = 3663 bits (1983), Expect = 0.0
Identities = 2334/2501 (93%), Gaps = 34/2501 (1%)
Strand=Plus/Plus
Query 1 CTCTGTTCTTCGTTGGCTATTATGATAAACCTAAAGCTCTTCTTAGAGCTAAAGTTATGT 60
||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct 98 CTCTGTTCTTCGTTGGC---TATGATAAACCTCAAGCTATTCTTAGAGCTAAAGTTATGT 154
Query 61 TTTTTAATAACTGTT-CTCTGTTCTTCACACGTCTCCTCTGTTTCTGATACTTTCTTCAT 119
|||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 155 TTTTTAATAACT-TTACTCTGTTCTTCACACATCTCCTCTGTTTCTGACACTTTCTTCAT 213
Query 120 CAACTGTGGATCTCCGACGAATGTAACAGTCAACAATAGAACCTTCGTGTCCGACAACAA 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 214 CAACTGTGGATCTCCGACGAATGTAACAGTCAACAATAGAACCTTCGTCTCCGACAACAA 273
Query 180 TCTTGTTCAAGGAATCTCTGTCGGAACCACCGATTCGAATTCAGGTGACGAATCGACTCT 239
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 274 TCTTGTTCAAGGATTCTCTGTCGGAACCACCGATTCGAATTCAGGTGATGAATCGACTCT 333
Query 240 GTTTCAGACCGCAAGAGTATTCTCCGATG-A--ATCATCAACTTACCGATTCCCGATCGA 296
||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 334 GTTTCAGACCGCAAGAGTATTCTCCGATGAATCATCATCAACTTACAGATTCCCGATCGA 393
Query 297 GAAACACGGTTGGTTCTTGATTCGTCTTTACTTTTTACCCTTAGTCTCTGCTTCTCAAGA 356
| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 394 GGAACACGGTTGGTTCTTGATTCGTATTTACTTTTTACCATTAGTCTCTGCTTCTCAAGA 453
Query 357 TCTAACCACAGCTAGATTCTCAGTCTCGGCTCAGAATTTCACTCTGATCAGAGAATACAA 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 454 TTTAACCACAGCTAGATTCTCAGTCTCGGCTCAGAATTTCACTCTGATCAGAGAATATAA 513
Query 417 ACCCTCAACGACTTCTGTTGTTAAAGAATACAGTTTAAACATCT-CTAAC-GATAATCT- 473
||||||||||||||||||||||| |||||||| ||||||| | | | || |||| |||
Sbjct 514 ACCCTCAACGACTTCTGTTGTTAGAGAATACATTTTAAACGT-TAC-CACAGATAGTCTC 571
Query 474 AT-CTCTCGAATTTCGT-CGTCA-AGCCGGTTCTATCGCTTTCATCAATGCCTTGGAAGT 530
| || || | |||| | | | | | | |||||| | ||||||||||||| ||||||||
Sbjct 572 TTGCT-TC-AGTTTC-TCCCT-AGAACTGGTTCTGTTTCTTTCATCAATGCTTTGGAAGT 627
Query 531 TTTTAGACTTCCAGAGAATTTGATACCTGAAGATGCAAAACTCATTGGTACACAAAAGGA 590
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 628 TTTGAGACTTCCAGAGACTTTGATACCTGAAGATGCAAAACTCATTGGTACACAGAAGGA 687
Query 591 TCTCAAGCTCAGGAGTCACGCTATGGAGACTGTTTCTCGTGTAAACATGGGGAATCTTAG 650
||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 688 TCTTAAGCTCAGTAGTCATGCGATGGAGACTGTTTCTCGTGTAAACATGGGGAATCTTAG 747
Query 651 CGTGAGTCGTGATCAAGATAAGCTATGGAGGCAATGGGATTCGGATTCTGCGTATAAAGC 710
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 748 TGTGAGTCGTGATCAAGATAAGCTGTGGAGGCAATGGGATTCTGATTCTGCTTATAAAGC 807
Query 711 TCAATTCGGAACGCCGGTTATGAACCTCGAAGCGGTTAACTTCAGTGCTGGTGGAATAAC 770
||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 808 TCACTTCGGTACACCGGTTATGAACCTCAAAGCGGTTAACTTCAGTGCTGGTGGAATAAC 867
Query 771 TGATGACATTGCTCCTGTTTATGTCTATGGAACAGCCACGAGGTTAAACTCTGA---TGA 827
|||||||||||| || ||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 868 TGATGACATTGCACCAGTTTACGTCTATGGAACCGCCACGAGGTTAAACTCTGATCTTGA 927
Query 828 TCCTCGTACTAATGCCAATCTTGCTTGGACATTTAAAATCGTGCCTGGTTTCGATTACTT 887
|||| |||||| ||||||||| |||||||||| ||| ||| ||||||||||||||||||
Sbjct 928 TCCTAATACTAACGCCAATCTTACTTGGACATTCAAAGTCGAGCCTGGTTTCGATTACTT 987
Query 888 TGTCCGGTTTCACTTTTGTAACATAATAGTGGATCCTTTTGGTTTCGAGCGTCAGATACG 947
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 988 TGTTCGGTTTCACTTTTGTAACATAATAGTGGATCCTTTTGGATTCGAGCGTCAGATACG 1047
Query 948 CTTTGACATTTTTGTGAATTCAGAGAATGTTAGGTCCGTTGATATGGCAGAGGTTGCAAA 1007
||||||||||||||||| |||||||| ||||| || |||||||| |||||||| |||
Sbjct 1048 TTTTGACATTTTTGTGAACTCAGAGAAAGTTAGAACCATTGATATGACAGAGGTTTTAAA 1107
Query 1008 TGGCACTTTTGGAGCTCCTTAtttt-tttGATGCAGTGATGCAG-AAAGCGAGAAGTCGA 1065
||| |||||||| ||||||| |||| ||||||||||||||| | ||||||| ||| ||
Sbjct 1108 TGGAACTTTTGGGGCTCCTT-TTTTCGTTGATGCAGTGATGC-GTAAAGCGAAAAGCCGT 1165
Query 1066 GAAGGATTCTTGAATCTATCTATTGGTTTAGGTATGGATGTTTCTTCGTACCCTGTTTCT 1125
||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1166 GAAGGGTTCTTGAATTTATCTATTGGTTTAGTTATGGATGTTTCTTCGTACCCTGTTTCT 1225
Query 1126 TTTATCAACGGATTTGAGATTTTGAAGCTAAGCAACGATAAGCAGAGTCTTGACGCTTTT 1185
||||| |||||||||||||||| |||||||||||| ||||||| ||||||||| ||||||
Sbjct 1226 TTTATTAACGGATTTGAGATTTCGAAGCTAAGCAATGATAAGCGGAGTCTTGATGCTTTT 1285
Query 1186 GATG-C-TGTTTCCCATGATGGTTCTTCGCGTAACAAGAGTTCGAATACGAGAATCGGAT 1243
|||| | | ||| || ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1286 GATGCCAT-TTTACC-TGATGGTTCTTCGAGTAACAAGAGTTCGAATACGAGTGTCGGAT 1343
Query 1244 TGATAGCTGGTTTATCTGCAGCtttgtgtgttgctttagtgtttggtgtggttgtatttt 1303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1344 TGATAGCTGGTTTGTCTGCAGCTTTGTGTGTTGCTTTAGTGTTTGGTGTGGTTGTGTCTT 1403
Query 1304 ggtggtgtgtCAGGAAAAGAAGAAGAAGAAATAGACAAATGCAGACTGTTCATTCTAGAG 1363
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 GGTGGTGCATTAGGAAAAGAAGAAGAAGAAATAGACAAATGCAGACTGTTCATTCTAGAG 1463
Query 1364 GAGATGATCATCAGATTAAGAAGAATGAAACCGGTGAGAGCTTAATCTTTTCGAGCTCAA 1423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1464 GAGATGATCATCAGATTAAGAAGAATGAAACAGGTGAGAGCTTAATCTTTTCGAGCTCAA 1523
Query 1424 AGATCGGCTATCGATACCCTTTGGCTCTAATCAAGGAAGCAACTGATGATTTTGATGACA 1483
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1524 AGATCGGTTATCGATACCCTTTGGCTCTAATCAAGGAAGCAACTGATGATTTTGATGAAA 1583
Query 1484 GCTTAGTGATTGGGGTTGGTGGGTTTGGTAAAGTTTACAAAGGAGTCTTGAGGGACAAAA 1543
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1584 GCTTAGTGATTGGGGTTGGTGGGTTTGGTAAAGTTTACAAAGGAGTCTTGAGAGACAAAA 1643
Query 1544 CCG-AGATAGCTGTGAAACGCGGTGTTCCTCAATCTCGTCAAGGTCTTGCGGAATTCAAG 1602
||| || ||||||||||||| |||| |||||||||||| |||||||| ||||| || |||
Sbjct 1644 CCGAAG-TAGCTGTGAAACGTGGTGCTCCTCAATCTCGACAAGGTCTGGCGGAGTTTAAG 1702
Query 1603 ACAGAGGTTGAAATGCTTACTCAGTTCAGACACAGGCATTTGGTTTCTTTAATCGGATAT 1662
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1703 ACAGAGGTTGAAATGCTTACTCAGTTCAGACACAGACATTTGGTTTCTTTAATCGGATAT 1762
Query 1663 TGTGATGAAAACAGCGAAATGATCATTGTTTATGAGTATATGGAGAAGGGAACGCTTAAG 1722
|| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1763 TGCGATGAAAACAGTGAAATGATCATTGTCTATGAATATATGGAGAAGGGAACGCTTAAG 1822
Query 1723 GACCATTTGTATGACTCGGATGATAACCCGAGGTTAAGTTGGAGACAGAGGCTTGAGATA 1782
|||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1823 GACCATTTGTATGACTTGGATGATAAGCCGAGGTTGAGTTGGAGACAGAGGCTTGAGATA 1882
Query 1783 TGCGTTGGTGCAGCTAGAGGGCTTCACTATCTCCACACAGGTTCCACAAGAGCAATCATA 1842
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1883 TGCGTTGGTGCAGCTAGAGGGCTTCATTATCTCCACACAGGTTCCACAAGAGCAATCATA 1942
Query 1843 CACCGCGATGTGAAATCTGCTAACATTCTCTTGGATGAGAATTTTATGGCCAAAGTTGCA 1902
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 1943 CACCGCGATGTGAAATCTGCTAACATTCTATTGGATGATAATTTTATGGCTAAAGTTGCA 2002
Query 1903 GACTTTGGATTGTCTAAGACAGGTCCGGATCTTGATCAAACACATGTGAGTACAGCGGTT 1962
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2003 GATTTTGGATTGTCTAAGACAGGTCCTGATCTTGATCAAACACATGTGAGTACCGCGGTC 2062
Query 1963 AAAGGAAGCTTTGGATATCTTGATCCAGAGTATCTAACAAGACAACAATTGACTGAGAAA 2022
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2063 AAAGGAAGCTTTGGATATCTTGATCCAGAGTATCTAACAAGACAACAATTAACTGAGAAA 2122
Query 2023 TCCGATGTTTACTCTTTTGGTGTGGTGATGCTTGAAGTAGTATGCGGTAGACCAGTCATT 2082
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2123 TCTGATGTTTACTCTTTTGGTGTGGTGATGCTTGAAGTAGTATGTGGTAGACCAGTCATT 2182
Query 2083 GATCCTTCGCTACCTAGAGAGAAAGTGAATTTGATCGAATGGGCGATGAAGTTGGTGAAG 2142
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2183 GATCCATCACTACCGAGAGAGAAAGTGAATTTGATCGAATGGGCGATGAAGTTGGTGAAG 2242
Query 2143 AAAGGGAAATTGGAAGATATCATAGACCCTTTTCTTGAAGGGAAAGTAAAGCTTGAAGAG 2202
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 2243 AAAGGGAAATTGGAAGATATCATAGACCCATTTCTTGTAGGAAAAGTAAAGCTTGAAGAG 2302
Query 2203 GTGAAAAAGTACTGTGAGATAACAGAGAAGTGTTTGTCCCAAAACGGAATTGAGAGGCCA 2262
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2303 GTGAAAAAGTACTGTGAGGTAACAGAGAAGTGTTTGTCCCAAAACGGAATTGAGAGGCCA 2362
Query 2263 ACAATGGGAGATTTGTTGTGGAACCTAGAGTTCATGCTTCAGGTGCAAGCAAAAGATGAG 2322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2363 GCAATGGGAGATTTGTTGTGGAACCTAGAGTTCATGCTTCAGGTGCAAGCAAAAGATGAG 2422
Query 2323 AAAGCAGCAATGGTGGATGATAAGCCAGAGGCGAGCGTCGTGGGCTCGACCGTGCAGTTT 2382
||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 2423 AAAGCAGCAATGGTGGATGATAAGCCAGAGGCGAGTGTCGTTGGCTCGACCATGCAGTTT 2482
Query 2383 AGTGTGAATGGAGTGGGAGATATTGCAGGGGTCTCAATGAGTAAAGTTTTTGCGCAAATG 2442
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 2483 AGTGTGAATGGAGTGGGAGATATTGCAGGGGTCTCAATGAGCAAAGTTTTCGCACAAATG 2542
Query 2443 GTTAGAGAAGAAACGCGATAAAAGATTTGATCAAAAGAAGA 2483
||||||||||||||| |||||| |||||||||||||||||
Sbjct 2543 GTTAGAGAAGAAACGAGATAAAT-ATTTGATCAAAAGAAGA 2582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123210012008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5