BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934699

Length=1435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39415.1 | Symbols:  | F-box family protein | chr2:16458607-...   494    1e-138


> AT2G39415.1 | Symbols:  | F-box family protein | chr2:16458607-16458966 
REVERSE LENGTH=360
Length=360

 Score =  494 bits (267),  Expect = 1e-138
 Identities = 319/344 (93%), Gaps = 4/344 (1%)
 Strand=Plus/Plus

Query  25   GGCAGACGACGGTGGAAACGGAGACGGCGCCACCGCCGGTGACTGCTACGCTCATCATCA  84
            |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  9    GGCAGACGACGGCGGAAACGGAGACGGTGCCACCGCCGGTGACTGCTACGCTCATCATCA  68

Query  85   TC-GCCGAGATATCAAACTAGCAGGAGATTCAAGTGAAAATTTAGACTCAATCAGCTCTC  143
             |  | ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| |
Sbjct  69   -CTACAGAGATGTCAAACTAGCAAGAGATGCAAGTGAAAATATAGACTCAATCAGCTCGC  127

Query  144  TGCCTGATGTGATCCTCCAACAAATCCTCTCCTATCTTCCGACCAAATTATCCATCAGAA  203
            | ||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||
Sbjct  128  TTCCTGATGTGATCCTCCAACAAATCCTCTCCTCTCTTCCGACCAATTTAGCTATCAGAA  187

Query  204  CTTCAGTCTTGTCCACAAGATGGAGGCATGTATGGTAC-GATACACCTTCCCTCTACTTT  262
            ||||||||||||||||| |||||||||||||||||| | || ||||||| | | ||||||
Sbjct  188  CTTCAGTCTTGTCCACACGATGGAGGCATGTATGGT-CTGACACACCTTACATATACTTT  246

Query  263  GATGGACCAGGAACTTTTTATAGGGGACTGAAGGCTGATACGTTAAACAAAACCCTAGCT  322
            ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct  247  GATGGACCAGGAACTTTGTATAGGGGACTGAAGGCTGATACGATAAACAAAACCCTAGCT  306

Query  323  CGATACAAGCTTCCCAAGATTATGAGTTTTCACCTCTATACCAA  366
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  CGATACAAGCTTCCCAAGATTATGAGTTTTCACCTCTATACCAA  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 70732567905


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5