BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934705

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61275.1 | Symbols: U12 | U12; snRNA | chr1:22603121-2260329...   198    1e-50


> AT1G61275.1 | Symbols: U12 | U12; snRNA | chr1:22603121-22603295 
FORWARD LENGTH=175
Length=175

 Score =  198 bits (107),  Expect = 1e-50
 Identities = 156/178 (88%), Gaps = 9/178 (5%)
 Strand=Plus/Minus

Query  21   ATGGGGGATGGGGAGGCCCGCAC-AAGAGAGTTCTGCAAAAGTAAGCAGCGTCAACAC-T  78
            ||||| | | ||||||||||||| | | |||||||||||||||||||||||||||||| |
Sbjct  172  ATGGGTG-TAGGGAGGCCCGCACGAGGTGAGTTCTGCAAAAGTAAGCAGCGTCAACACAT  114

Query  79   CGCACCAGCCTATTTACCCTTCCATAAATTCTTGCGCC-ATTTTCAATGTTTTACGATTT  137
            ||  |||||||| | |||| |||||||||| ||||||| |||||   |||||||||| ||
Sbjct  113  CG-GCCAGCCTA-TAACCCCTCCATAAATTATTGCGCCAATTTT--GTGTTTTACGA-TT  59

Query  138  AGCGCTGCGACCGGCTCTCACCGTTCGCTTTGTTTTCCTTACTCATTAGTTTAAGGCA  195
            ||||| |||||||| ||||||||  |||||||||||||||||||||||||||||||||
Sbjct  58   AGCGCCGCGACCGGTTCTCACCGGACGCTTTGTTTTCCTTACTCATTAGTTTAAGGCA  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9400069063


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5