BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934712

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39260.1 | Symbols:  | binding;RNA binding | chr2:16392047-1...   531    3e-150


> AT2G39260.1 | Symbols:  | binding;RNA binding | chr2:16392047-16399680 
REVERSE LENGTH=3879
Length=3879

 Score =  531 bits (287),  Expect = 3e-150
 Identities = 320/336 (95%), Gaps = 2/336 (1%)
 Strand=Plus/Plus

Query  43    GCTTGCTTAGATGAATTTACTCATCATAACATTGATGTTGCTTGCAATCTTCTGGAGACA  102
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1854  GCTTGCTTAGATGAATTTACTCACCATAACATTGATGTTGCTTGCAATCTTCTGGAGACA  1913

Query  103   TGTGGCCGATTCCTTTATCGGTCTCCCGAAACCACGCTCAGGATGACTAATATGCTGGAC  162
             |||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct  1914  TGTGGCCGTTTCCTTTATCGGTCTCCTGAAACCACACTCAGGATGACAAATATGCTGGAC  1973

Query  163   ATATTGATGCGCCTGAAAAATGTCAAGAATTTAGATCCTCGTCAAAGCACACTTGTGGAA  222
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1974  ATATTGATGCGCCTGAAAAATGTCAAGAATTTAGATCCTCGTCAAAGCACTCTTGTGGAA  2033

Query  223   AATGCCTACTACCTT-TGTAAACCACCTGAAAGATCAGCACGAATTTCTAAAGTTCGTCC  281
             |||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct  2034  AATGCCTACTAC-TTGTGTAAACCTCCTGAAAGATCAGCAAGAATTTCTAAAGTTCGTCC  2092

Query  282   ACCATTGCATCAGTATATCCGAAAGTTGCTATTCTCAGATCTAGATAAAGACTCCATTGC  341
             |||||||||||||||| | ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct  2093  ACCATTGCATCAGTATGTTCGAAAATTGCTATTCTCTGATCTTGATAAAGATTCCATTGC  2152

Query  342   AAACGTACTGAAGCAACTGCGGAAGCTGCCATGGAG  377
             ||||||||||||||||||||||||||||||||||||
Sbjct  2153  AAACGTACTGAAGCAACTGCGGAAGCTGCCATGGAG  2188



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24263093001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5