BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934713
Length=205
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 281 1e-75
> AT2G39500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 12 growth stages; Has 16 Blast
hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:16489073-16489588
FORWARD LENGTH=400
Length=400
Score = 281 bits (152), Expect = 1e-75
Identities = 169/177 (95%), Gaps = 1/177 (1%)
Strand=Plus/Plus
Query 28 ATTCGATGTGAAGACGATCGTCAAGGACAAGAGATTCTGGGTCGCTTCCTTCCTCATCGT 87
|||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 30 ATTCGATGTGAAGACGATCGTCAAGGACAAGAGATTCTGGATTGCTTCCTTCATCATCGT 89
Query 88 CTGGGCTGCTGGTCTTCAGGGTCACATGATGTGGCTGCAGAAGCAAGAATCTTTCAAGCA 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 CTGGGCTGCTGGTCTTCAGGGTCACATGATGTGGCTGCAGAAGCAAGAATCTTTCAAGCA 149
Query 148 GAAATTCGGAACAATCGATGAAGACGATCACAAGTGATTCATGAGTTTAT-ATGTCT 203
|||||| |||||||||||||||||||| |||||||||||||||| ||||| | ||||
Sbjct 150 GAAATTTGGAACAATCGATGAAGACGACCACAAGTGATTCATGACTTTATTACGTCT 206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9154845882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5