BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934715

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   333    4e-91


> AT2G39500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant 
structures; EXPRESSED DURING: 12 growth stages; Has 16 Blast 
hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:16489073-16489588 
FORWARD LENGTH=400
Length=400

 Score =  333 bits (180),  Expect = 4e-91
 Identities = 199/208 (96%), Gaps = 2/208 (1%)
 Strand=Plus/Plus

Query  4    GCTTAACGAAAGGGTTTAATGGCGACGAGATTTGATGTGAAGACGATCGTCAAGGACAAG  63
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1    GCTTAACGAAAGGGTTTAATGGCGACGAGATTCGATGTGAAGACGATCGTCAAGGACAAG  60

Query  64   AGATTCTGGGTTGCTTCCTTCCTCATCGTCTGGGCTGCTGGTCTTCAGGGTCACATGATG  123
            ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  61   AGATTCTGGATTGCTTCCTTCATCATCGTCTGGGCTGCTGGTCTTCAGGGTCACATGATG  120

Query  124  TGGCTGCAGAAGCAAGAATCTTTCAAGCAGAAATTCGGAACAATCGATGAAGACGATCAC  183
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  121  TGGCTGCAGAAGCAAGAATCTTTCAAGCAGAAATTTGGAACAATCGATGAAGACGACCAC  180

Query  184  AAGTGAT-CATGAGTTTAT-ATGTCTCT  209
            ||||||| ||||| ||||| | ||||||
Sbjct  181  AAGTGATTCATGACTTTATTACGTCTCT  208



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9356051286


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5