BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934717
Length=566
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39518.1 | Symbols: | Uncharacterised protein family (UPF04... 804 0.0
AT2G39520.1 | Symbols: | unknown protein; Has 1 Blast hits to ... 171 9e-42
> AT2G39518.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr2:16495875-16496995 REVERSE LENGTH=737
Length=737
Score = 804 bits (435), Expect = 0.0
Identities = 527/571 (92%), Gaps = 7/571 (1%)
Strand=Plus/Plus
Query 1 TTCAACGTACTTATCAATTATATGGCACCACCACCTCCATCGCCACCACCAGTTTCCTTG 60
||||||||||| ||||||| |||||||||||||||||| ||||||||| | ||||| |||
Sbjct 38 TTCAACGTACTGATCAATTTTATGGCACCACCACCTCCTTCGCCACCAGCTGTTTCGTTG 97
Query 61 AAGGTATCACTCCTTCTT-CTTAGGGTATTAACAGGGGTTTTCCTCGTTATTGCGCTCAT 119
||||| | ||||||| || |||||||| |||||||| |||||||| ||||| ||||| ||
Sbjct 98 AAGGTTTTACTCCTT-TTACTTAGGGTTTTAACAGGAGTTTTCCTTGTTATAGCGCTAAT 156
Query 120 CATCCTCAGCACCAACAGTGTCACCATTGTATCTCAAGGAAGCGCATTAAAATTTCATTT 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 157 CATCCTCAGCACCAACAGTGTCACCATTGTATCTCAAGGAAGCGCATTGAAATTTCATTT 216
Query 180 CAAAGATGTTTATGCCTATAGATACATGCTTTCAGCTGCCGTCATCGGACTACTTTACGC 239
||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 217 CAAAGATGTTTATGCTTATAGATATATGCTTTCAGCTGCCGTCATTGGACTGGTTTACGC 276
Query 240 CGTCATACAACTGTTCTTCACAATCTCCGAATTCGCCACCGGAATGAAAAATCCTTTTAA 299
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 277 CGTCATACAACTGTTCTTCACAATCTCCGAATTCGCCACCGGAGTGAAAAACCCTTTTAA 336
Query 300 TTATCAACTCGATTTTTACGGTGACAAGTTAATATCATATCTAGTGGCGACGGGTTCGGC 359
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 337 TTATCAACTTGATTTTTACGGTGACAAGTTAATATCATACCTAGTGGCGACGGGTTCTGC 396
Query 360 AGCTGGATTTGGAGTGAGCAAGGATTTGAAAGATGCATTTATAGCATTAGTGGCATTGGA 419
||||||||||||||||| ||| ||||||||||| ||||| |||||||||| ||||| ||
Sbjct 397 AGCTGGATTTGGAGTGACCAAAGATTTGAAAGACACATTTCTAGCATTAGTCGCATTAGA 456
Query 420 TTCGACTGATCCTGTGGATAGGTTCTTTAGCAGAGGATACGCATCGGCCAGTCTTCTTCT 479
|||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct 457 TTCGACTGATCCAGTGGATAAGTTCTTTAGCAAAGGCTACGCATCGGCCAGTCTTCTTCT 516
Query 480 CTTTTCTTTCATCTGTCTTGCTGTTTTATCTGTTTTCTCATCCTTTGCCATTGCCAAACG 539
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 517 CTTTGCTTTCATCTGTCTTGCTGTTTTATCTGTTTTCTCATCCTTTGCCATGGCCAAACG 576
Query 540 AAATTAACTT-TAGTCT--TC-TCATTATAC 566
||||||| || |||||| || |||||||||
Sbjct 577 AAATTAA-TTCTAGTCTGATCATCATTATAC 606
> AT2G39520.1 | Symbols: | unknown protein; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:16496813-16497621 FORWARD LENGTH=291
Length=291
Score = 171 bits (92), Expect = 9e-42
Identities = 121/135 (90%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 13 ATCAATTATATGGCACCACCACCTCCATCGCCACCACCAGTTTCCTTGAAGGTATCACTC 72
||||||| |||||||||||||||||| ||||||||| | ||||| |||||||| | ||||
Sbjct 134 ATCAATTTTATGGCACCACCACCTCCTTCGCCACCAGCTGTTTCGTTGAAGGTTTTACTC 75
Query 73 CTTCTT-CTTAGGGTATTAACAGGGGTTTTCCTCGTTATTGCGCTCATCATCCTCAGCAC 131
||| || |||||||| |||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 74 CTT-TTACTTAGGGTTTTAACAGGAGTTTTCCTTGTTATAGCGCTAATCATCCTCAGCAC 16
Query 132 CAACAGTGTCACCAT 146
|||||||||||||||
Sbjct 15 CAACAGTGTCACCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27176673527
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5