BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934727
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39650.1 | Symbols: | Protein of unknown function (DUF506) ... 1483 0.0
> AT2G39650.1 | Symbols: | Protein of unknown function (DUF506)
| chr2:16527792-16529407 REVERSE LENGTH=1311
Length=1311
Score = 1483 bits (803), Expect = 0.0
Identities = 908/959 (95%), Gaps = 5/959 (1%)
Strand=Plus/Plus
Query 3 GACCGAGATTTGGGAACGATGGGGATGGACTTGAGGGTTGTTCCGGCGGAGGAATGGTTG 62
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 116 GACCGAGATTTGGGAACGATGGGTATGGACTTGAGAGTTGTTCCGGCGGAGGAATGGTTG 175
Query 63 AATCGAGGGAGAGATTCGAGTCATGACGGTGAACGTGACCTAGGGCTCATGGTTACAGAT 122
|||||||||| |||||||||||| |||||||||| ||||||||| || ||||||||||||
Sbjct 176 AATCGAGGGATAGATTCGAGTCACGACGGTGAACATGACCTAGGCCTAATGGTTACAGAT 235
Query 123 TTTCTGGAAACGGGTGGCGGTGGAAGCGGTGGTGCTGGTTCCTGGTGTAGCAGCGATAGC 182
||||||||||| | || ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 236 TTTCTGGAAAC--G-GGAGGTGGTAGCGGTGGTGCTGGTTCCTGGTGCAGCAGCGACAGC 292
Query 183 GATTCTGGATTCCCAGATCCTTCTTACCTTTCCGATAAGATTCAGTATCTTAAGTACTCT 242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 293 GATTCTGGATTCCCAGATCCTTCTTACCTTTCCGATAAGATTCAGTATCTCAAGTACTCT 352
Query 243 GTGGCTCAACATGAAACTGAGGTTCTCTCGGCGGTTCGTACATTGATGCTGACTATTAAG 302
|||||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||||
Sbjct 353 ATGGCTCAACACGAAACCGAGGTTCTCTCGGTGGTTCGTACATTGATGCTTACTATTAAG 412
Query 303 GAGAAAGATCTTCACTCTGTGAAATCCGGTACATGTAACGCCAGTTGCATTAGGTTTTAT 362
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 413 GAGAAAGATCTACACTCTGTGAAATCCGGTACATGTAACGCTAGTTGCATCAGGTTTTAT 472
Query 363 CTTGCAAAGCTTTTGAGACTTTCTGGATATGATGCAGCTGTTTGTTCAGCTAGATGGCAA 422
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 473 CTCGCTAAGCTTTTGAGACTTTCTGGATATGATGCAGCTGTATGTTCAGCTAGATGGCAA 532
Query 423 GGCGGTGGCAAAGTTCCTGGTGGAGATAATGAGTATATAGATATCATATTGAGTGATACT 482
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GGTGGTGGCAAAGTTCCTGGTGGAGATAATGAGTATATAGATATCATATTGAGTGATACT 592
Query 483 GAAGTTGGCCAAGATGATCGTTTGATTGTTGACATTGATTTCAGAAGTCATTTTGAAATC 542
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 593 GAAGTTGGTCAAGATGATCGTTTGATTGTTGATATTGATTTCAGAAGTCATTTTGAGATC 652
Query 543 GCTCGAGCTGTGGATTCTTACCAACGGATAATGGAATCACTCCCTGTGGTTTATGTAGGA 602
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 653 GCTAGAGCTGTGGATTCTTACCAACGGATAATGGAATCACTTCCTGTGGTTTATGTAGGA 712
Query 603 ACCGTGGCAAGATTAAACCAGTTCCTCCAAGTAATGGTTGATGCAGCTAAATTCTCCTTA 662
|| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 713 ACTGTTGCAAGATTAAACCAGTTCCTTCAAGTAATGGTTGATGCAGCGAAATTCTCCTTA 772
Query 663 AAGCAGAATTCGATGCCGTTACCTCCTTGGAGATCTCTGAACTACCTGCGATCCAAATGG 722
||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 773 AAGCAGAATTCAATGCCGTTACCTCCATGGAGATCTTTGAACTACCTGCGATCCAAATGG 832
Query 723 CATTCACCTCACAAAAGGCATCTTGGTCCGATCGATCATCAAGGTCCTGGAATGTTCTCA 782
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 833 CATTCACCTCACAAAAGGCATCTCGGTCCTATCGATCAACAAGGTCCTGGAATGTTCTCA 892
Query 783 CCTGGATTGCATGGACAGTGTGCTGAGAATTTAAAGAGGCTTCAGTTTGCTCTCCAGGTC 842
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CCGGGATTACATGGACAGTGTGCTGAGAATTTAAAGAGGCTTCAGTTTGCTCTCCAGGTT 952
Query 843 GAACAAGAGTCAGAGAGATTCATGAAGAAGA-GCAGCGGGTTTAGCCGCAGGAACAAACC 901
||||||||| | ||||||||||||||||||| | ||||| ||||||||||||||| ||||
Sbjct 953 GAACAAGAGGCCGAGAGATTCATGAAGAAGAAG-AGCGGTTTTAGCCGCAGGAACTAACC 1011
Query 902 CGAGATAATGAGAATTCAAGGGGCTCGTGCTCCTTAAAGAGATTGTACAGATGTTTTTT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CGAGATAATGAGAATTCAAGGGGCTCGTGCTCCTTAAAGAGATTGTACAGATGTTTTTT 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5