BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934741
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39760.1 | Symbols: ATBPM3, BPM3 | BTB/POZ/MATH-domains cont... 1977 0.0
> AT2G39760.1 | Symbols: ATBPM3, BPM3 | BTB/POZ/MATH-domains containing
protein | chr2:16583073-16586252 FORWARD LENGTH=1636
Length=1636
Score = 1977 bits (1070), Expect = 0.0
Identities = 1175/1227 (96%), Gaps = 2/1227 (0%)
Strand=Plus/Plus
Query 1 TTCTTCGTAATCGACGACG--GAGATCATGAGCACCGTCGGAGGTGTAGAGCAGTTGATA 58
||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 114 TTCTTCGTAATCGACGACGAAGAGATCATGAGTACCGTCGGAGGTATAGAGCAGTTGATA 173
Query 59 CCTGATTCAGTATCGACGTCGTTCATCGAGACGGTGAATGGTTCGCATCAGTTTACGATT 118
|||||||| || || |||||||||||||| |||||||| |||||||| ||||| ||||||
Sbjct 174 CCTGATTCCGTTTCAACGTCGTTCATCGAAACGGTGAACGGTTCGCACCAGTTCACGATT 233
Query 119 AAAGGTTACTCTCTAGCCAAAGGCATGAACCCTGGGAAGTTTATACAGAGCGATGTCTTC 178
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 234 CAAGGTTACTCTCTAGCCAAAGGCATGAGCCCTGGGAAGTTTATACAGAGCGATATCTTC 293
Query 179 TCCGTCGGTGGATACGATTGGGCGATTTACTTTTATCCCGATGGAAAGAACCCAGAGGAT 238
||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 294 TCCGTTGGTGGATACGATTGGGCGATTTACTTCTATCCTGATGGGAAGAACCCGGAGGAC 353
Query 239 CAGTCCTTGTATATCTCTTTGTTCATCGCTTTAGCGAGTGATTCTAATGATATTAGGGCT 298
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CAGTCCTCGTATATCTCTTTGTTCATCGCTTTAGCGAGTGATTCTAATGATATTAGGGCT 413
Query 299 TTGTTTGAGCTGACGCTGATGGATCAGAGTGGGAAAGGGAAACATAAGGTGCATAGTCAC 358
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTGTTTGAGCTTACGCTTATGGATCAGAGTGGGAAAGGGAAACATAAGGTGCATAGTCAC 473
Query 359 TTTGATCGGGCGCTTGAAGGTGGACCTTATACGCTCAAGTATAAAGGAAGCATGTGGGGT 418
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 474 TTTGATCGGGCGCTTGAAGGTGGTCCTTATACACTTAAGTATAAAGGAAGCATGTGGGGT 533
Query 419 TACAAACGCTTTTTCAAACGATCAGCTTTAGAAACCTCTGACTACTTAAAGGATGATTGT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TACAAACGCTTTTTCAAACGATCAGCTTTAGAAACCTCTGACTACTTAAAGGATGATTGT 593
Query 479 CTTGTCATCAATTGTACTGTTGGTGTTGTTAGAGCCCGACTTGAGGGTCCAAAACAGTAT 538
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 594 CTTGTCATCAATTGTACTGTTGGCGTTGTTAGAGCCCGACTCGAGGGTCCAAAACAGTAT 653
Query 539 GGCATTGTGCTACCCCTGTCGAACATGGGTCAGGGATTGAAAGACTTGTTAGATTCTGAG 598
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 654 GGCATTGTGCTACCCCTGTCGAATATGGGTCAGGGATTGAAAGACTTGTTAGATTCTGAA 713
Query 599 GTTGGTTGTGACATAGCTTTTCAAGTCGGAGATGAAACATACAAAGCTCACAAACTGATT 658
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 714 GTTGGTTGTGACATAGCTTTCCAAGTCGGAGATGAAACATACAAAGCTCACAAACTGATT 773
Query 659 CTTGCGGCACGCTCCCCAGTTTTTAGAGCTCAATTTTTTGGACCAATTGGGAATAACAAT 718
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 774 CTCGCGGCACGCTCCCCAGTTTTTAGAGCTCAGTTTTTTGGACCAATTGGGAATAACAAT 833
Query 719 GTGGATAGAATAGTGATAGAGGACATCGAACCTTCTATCTTCAAGGCTATGCTTAGCTTC 778
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 834 GTGGATAGAATAGTGATAGACGACATCGAACCTTCTATCTTCAAGGCTATGCTTAGCTTC 893
Query 779 ATCTACACCGATGTACTTCCTGATGTGCATGAAATTACTGGGTCAACTTCTGCCAGTTCG 838
|| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 894 ATTTACACCGATGTACTTCCTAATGTGCATGAAATTACCGGGTCAACTTCTGCCAGTTCG 953
Query 839 TTCACAAACATGATACAACATCTTTTGGCAGCTGCTGACCTTTATGACCTTGCAAGGTTA 898
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 954 TTTACAAACATGATACAACATCTCTTGGCAGCTGCTGACCTCTATGACCTTGCAAGGTTA 1013
Query 899 AAGATATTATGTGAAGTTTTGCTATGCGAAAAACTCGATGTTGATAATGTGGCAACAACA 958
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1014 AAGATATTATGTGAAGTTTTGCTATGCGAAAAACTTGATGTTGATAATGTGGCAACAACA 1073
Query 959 CTTGCGCTGGCTGAACAGCACCAGTTCTTACAGCTCAAAGCGTTCTGCTTAAAATTTGTT 1018
|||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1074 CTTGCGTTGGCTGAACAGCACCAATTCTTACAGCTCAAAGCGTTCTGCTTAGAATTTGTT 1133
Query 1019 GCATCTCCAGCAAACTTGGGAGCTGTAATGAAATCTGAAGGGTTCAAGCACTTGAAACAG 1078
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1134 GCATCTCCAGCAAACTTGGGAGCTGTAATGAAGTCCGAAGGGTTCAAGCACTTGAAACAG 1193
Query 1079 AGCTGTCCCACTCTGTTATCTGAGTTGCTGAACACTGTTGCAGCAGGAGATAAGAGCTCG 1138
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1194 AGCTGTCCCACTTTGTTATCTGAGTTGCTGAACACTGTTGCAGCAGCAGATAAGAGCTCG 1253
Query 1139 ACGAGTGGACAATCGAACAAGAAAAGAAGTGCGAGCAGTGTACTAGGGTGTGACACTACA 1198
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1254 ACGAGTGGACAATCAAACAAGAAAAGAAGTGCGAGCAGTGTATTAGGGTGTGACACTACA 1313
Query 1199 AATGTGAGGCAAGTGAGGAGGAGGACA 1225
|||||||||||| |||||||||| |||
Sbjct 1314 AATGTGAGGCAATTGAGGAGGAGAACA 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62449477980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5