BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934744
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39780.1 | Symbols: RNS2 | ribonuclease 2 | chr2:16591222-16... 1301 0.0
> AT2G39780.1 | Symbols: RNS2 | ribonuclease 2 | chr2:16591222-16593775
FORWARD LENGTH=1074
Length=1074
Score = 1301 bits (704), Expect = 0.0
Identities = 775/810 (96%), Gaps = 2/810 (0%)
Strand=Plus/Plus
Query 1 GGTTTCAATCCAATTAGAGTCAATGGCGTCGCGTATATGTCTTCTCCTTCTCGTTGTGTT 60
|||||||||| ||||| ||||||||||||| ||| ||||||||||||||||||||| ||
Sbjct 13 GGTTTCAATCGAATTAAAGTCAATGGCGTCACGTTTATGTCTTCTCCTTCTCGTTGCGTG 72
Query 61 TCTCGCCGGAGCATTTGCCGGAGACGTCATCGAAGTCAATAAATCTCAGAGGGAGTTCGA 120
| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 73 TATCGCCGGAGCATTTGCCGGAGACGTCATCGAACTCAATCGATCTCAGAGGGAGTTCGA 132
Query 121 TTATTTCGCTCTCTCTCTTCAATGGCCCGGAACCTATTGCCGTGGAACTCGCCATTGTTG 180
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 133 TTATTTCGCTCTATCTCTTCAATGGCCTGGAACCTATTGCCGTGGAACTCGCCATTGTTG 192
Query 181 CTCCAAAAACGCTTGCTGCAGAGGCTCCGATGCTCCAACTCAATTCACAATTCATGGGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CTCCAAAAACGCTTGCTGCAGAGGCTCCGATGCTCCAACTCAATTCACAATTCATGGGTT 252
Query 241 ATGGCCTGACTATAACGACGGTTCATGGCCTTCGTGTTGTTATCGATCTGATTTTAAAGA 300
|||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 253 ATGGCCTGACTATAACGATGGTTCGTGGCCTTCATGTTGTTATCGATCTGACTTTAAAGA 312
Query 301 GAAGGAGATTTCAACGTTGATGGATGGTCTTGAGAAGTACTGGCCTAGTCTTAGTTGTGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 313 GAAGGAGATTTCAACGTTGATGGATGGTCTTGAGAAGTACTGGCCTAGTCTCAGTTGTGG 372
Query 361 TTCTCCATCATCATGCAATGGTGGGAAAGGGTCATTTTGGGGTCATGAGTGGGAGAAACA 420
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 373 TTCTCCATCATCATGCAATGGTGGGAAAGGGTCATTTTGGGGCCACGAGTGGGAGAAACA 432
Query 421 TGGGACTTGTTCTTCTCCTGTTTTTCATGATGAGTATAATTACTTCCTTACCACACTTAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TGGGACTTGTTCTTCTCCTGTTTTTCATGATGAGTATAATTACTTCCTTACCACACTTAA 492
Query 481 TATCTACTTGAAGCATAATGTCACGGATGTCCTTTATCAAGCTGGCTATGTTGCTTCCAA 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TCTCTACTTGAAGCATAATGTCACGGATGTCCTTTATCAAGCTGGCTATGTTGCTTCCAA 552
Query 541 CAGCGAAAAGTATCCTCTAGGAGGTATCGTAACAGCCATTCAGAATGCATTTCATATCAC 600
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 CAGTGAAAAGTATCCTCTAGGAGGTATCGTAACAGCCATTCAGAATGCATTTCATATCAC 612
Query 601 CCCTGAAGTGGTATGCAAAAAAGATGCAATCGATGAAATACGTATATGCTTCTATAAAGA 660
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 613 CCCTGAAGTGGTTTGCAAAAGAGATGCAATCGATGAAATACGTATATGCTTCTATAAAGA 672
Query 661 TTTTAAGCCCAGGGACTGTGTTGGTTCAAAAGAATTAACGTCGAGAAAATCATGTCCCCA 720
|||||||||||||||||||||||||||| |||| || || || ||||| ||||| |||||
Sbjct 673 TTTTAAGCCCAGGGACTGTGTTGGTTCACAAGATTTGACATCTAGAAAGTCATG-CCCCA 731
Query 721 -GTACGTAAGTTTACCGGAATACACACCATTGGATGGTGAAGCTATGGTTCTGAAGATGC 779
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 732 AGTACGTAAGTTTGCCGGAATACACGCCATTAGATGGTGAAGCTATGGTTCTGAAGATGC 791
Query 780 CAACAGAAAGAGAAGCTCTTTGAATTGGAA 809
||||||||||||||||||||||||| ||||
Sbjct 792 CAACAGAAAGAGAAGCTCTTTGAATCGGAA 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5