BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934747
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39790.1 | Symbols: | Mitochondrial glycoprotein family pro... 845 0.0
> AT2G39790.1 | Symbols: | Mitochondrial glycoprotein family protein
| chr2:16594833-16595800 FORWARD LENGTH=723
Length=723
Score = 845 bits (457), Expect = 0.0
Identities = 650/740 (88%), Gaps = 25/740 (3%)
Strand=Plus/Plus
Query 24 ATGGCTTTTGCTTGGGGCGTGCGGAAGTCAGCAACTAAGCTCGCTTCCGTATGTGGTCGA 83
||||||||||||||| |||| || | ||||||| ||||| | ||||||| |||||||| |
Sbjct 1 ATGGCTTTTGCTTGGTGCGTACGCAGGTCAGCATCTAAGTTGGCTTCCGCATGTGGTCAA 60
Query 84 GTCCGGTCTATCTCGGCGGTTGTGAACCGTCCGTCTCTAGCTCTGAACCCGTCTCCGCTG 143
| |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 61 GCCCGGTCTATCTCCGCCGTTGTGAACCGTCCGTCTCTTGCTCTCAACCCGTCTCCGCTG 120
Query 144 AGTCATTTAGTCTCTCGTGGCTTTCTTTACACGATGGCTGTTGATCAGCTGACCTCTGAG 203
|||| ||| |||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 121 AGTCCTTTCGTCTCTCGTGGCTTTCTTTACACGATGGCTGTTGATAAGCTGAGCTCTGAG 180
Query 204 CAAACCCTTCTCCTTGTGATTGAATCCGAGCTCAATTCTGCTTTGCAAACCGATGATCGC 263
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 181 CAAACCCTTCACCTTGTGATTGACTCCGAGCTCAATTCTGCTTTGCAAACCGATGATCCC 240
Query 264 AATTTAG-AGGAAGAGATGGATCTAGGAAGCTTCCCTTTTAGAATTGA-AGACGATCCTG 321
||||| | | |||||||||| || ||||||||||||||| | |||| | |||| | ||||
Sbjct 241 AATTT-GAATGAAGAGATGGCTCCAGGAAGCTTCCCTTTGAAAATT-AGAGACAAGCCTG 298
Query 322 GAGATCAGAGTGTAACAATGACTAG-AGACTACAATGAGGAACATATTGAAGTTTCAT-T 379
||||||||||||||||| |||| || | | |||||||| |||| |||| | | || || |
Sbjct 299 GAGATCAGAGTGTAACATTGAC-AGCATATTACAATGACGAACGTATTCATG-TTGATGT 356
Query 380 AGGCATGCCTTATCTTGGTGCTGATGTCATTGATGCGTTTGGTACTCGTAAGGATGAACT 439
||| |||||||||||||||| |||||||||||||| ||||||| || ||| ||||||||
Sbjct 357 AGGAATGCCTTATCTTGGTGATGATGTCATTGATGTGTTTGGTCCTAATAATGATGAACT 416
Query 440 AAGTTTTCCACTAGTTGTGACTGTTACCAAGAAGAGCGGACTCAGCCTAGAGTTTACCTG 499
|||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||||||
Sbjct 417 AAGTTTTCCACTAGTTGTGACTGTTATCAAGAAGAACGGAGTCAGCATAGAGTTTACCTG 476
Query 500 CGAGGCTTATGCTGATTATATTGACTTAACAGATTTAACTGTGAATTATCCGGAGGATTC 559
| ||||||||||||||||||||||||||||||||||||||||| || || | | |
Sbjct 477 CCAGGCTTATGCTGATTATATTGACTTAACAGATTTAACTGTGCATGATT---A---T-C 529
Query 560 TTTGGAGTATCTAATGG-A-AA-CTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCT 616
|||||| ||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 530 -----AGTATCAAATGGGAGAAACTGACTGGCCTCGTTTCAAAAACTTGGACGATAATCT 584
Query 617 GAAGAAGGCGTTCCAAAGGTATCTAGCGACCAGAGTTGAAACAAGCACAGTGAAACTCTT 676
||||||||||||||| |||||||| ||||||||| |||| ||| || | |||||||||
Sbjct 585 GAAGAAGGCGTTCCACAGGTATCTGGCGACCAGACTTGACGCAAACATAACGAAACTCTT 644
Query 677 GCATAAGTACATGATGAGCAAAATAAAGAGAGAGTACTTAG-TATGGTTGAAGAATGTTA 735
||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 645 GCATAAGTACATGGTGAGCAAAATAAAGAGAGAGTACTT-GCTATGGTTGAAGAATGTTA 703
Query 736 AGAAGTTTGTGCATGAATGA 755
| ||||||||| ||| ||||
Sbjct 704 ACAAGTTTGTGGATGGATGA 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37675610250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5