BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934750
Length=520
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76640.1 | Symbols: | Calcium-binding EF-hand family protei... 723 0.0
AT1G76650.1 | Symbols: CML38 | calmodulin-like 38 | chr1:287667... 412 1e-114
> AT1G76640.1 | Symbols: | Calcium-binding EF-hand family protein
| chr1:28765324-28765803 REVERSE LENGTH=480
Length=480
Score = 723 bits (391), Expect = 0.0
Identities = 447/475 (94%), Gaps = 0/475 (0%)
Strand=Plus/Plus
Query 21 ATGAAGAACACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTGGAGGACAAGAAC 80
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGAAGAACACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTAGAGGAGAAGAAC 60
Query 81 AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGTAGAATCTCTGCA 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGTAGAATCTCTGCA 120
Query 141 GAGGAGCTCAAGAAGAGTTTCAACACATTGGGAGAGCAAATCTCTGATGAAGAAGCCGAG 200
|||||||| ||||||||||| || || |||||||||||||| ||||||||||||||||||
Sbjct 121 GAGGAGCTTAAGAAGAGTTTTAAGACGTTGGGAGAGCAAATGTCTGATGAAGAAGCCGAG 180
Query 201 GCTGCGGTTAAACTGTCTGATATAGACGGTGATGGAATGTTGGATTTTCATGAGTTTGCT 260
|||||||||||||| |||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 181 GCTGCGGTTAAACTCTCTGATATAGACGGTGATGGGATGTTGGATATTAATGAGTTTGCT 240
Query 261 CAACTTATCAAAGGCAATGATGAATTCACTGAAGAAGAGAAGAAGAGGAAGATAATGGAA 320
| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 241 CTGCTTATCAAAGGGAATGATGAATTCACTGAGGAAGAAAAGAAGAGGAAGATAATGGAA 300
Query 321 GCTTTTAGAATGTATATTGCTGATGGGGAAGATTGTATTACCCCGGAAAGCTTGAAGATG 380
|||||||||||||| ||||||||||| |||||||| ||||| |||| ||||||||||||
Sbjct 301 GCTTTTAGAATGTACATTGCTGATGGAGAAGATTGCATTACTCCGGGGAGCTTGAAGATG 360
Query 381 ATGCTAATGAAGCTAGGTGAGTCGAGAACCACTGATGATTGCAAAGTTATGATTCAAGCT 440
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGCTAATGAAGCTTGGTGAGTCTAGAACCACTGATGATTGCAAAGTTATGATTCAAGCT 420
Query 441 TTTGATAACAATGCTGATGGAGTTCTAAGCTTTGATGAGTTTGCTCTCATGATGC 495
|||||| ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 421 TTTGATCTCAATGCTGATGGAGTTCTAAGCTTTGATGAGTTCGCCCTCATGATGC 475
> AT1G76650.1 | Symbols: CML38 | calmodulin-like 38 | chr1:28766750-28767517
REVERSE LENGTH=768
Length=768
Score = 412 bits (223), Expect = 1e-114
Identities = 379/451 (84%), Gaps = 24/451 (5%)
Strand=Plus/Plus
Query 69 GAGGACAAGAACAGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGT 128
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 187 GAGGACAAGAACAGAGAGTTAGAGGCTGTTTTTTCTTACATGGATGCAAACAGAGACGGT 246
Query 129 AGAATCTCTGCAGAGGAGCT-CAAGAAGAGTTTCAACACATTGGGAGAGCAAATCTCTGA 187
|||||||| |||| ||||| ||| |||||||||| ||||||||||| ||| | |||||
Sbjct 247 AGAATCTCACCAGAAGAGCTTCAA-AAGAGTTTCATGACATTGGGAGAACAATTGTCTGA 305
Query 188 TGAAGAAGCCG-AGGCTGCGGTTAAACTGTCTGATATAGACGGTGATGGAATGTTGGATT 246
||||||||||| || |||| |||| | ||||||||| ||||| ||||| ||||||||||
Sbjct 306 TGAAGAAGCCGTAG-CTGCTGTTAGATTGTCTGATACGGACGGAGATGGGATGTTGGATT 364
Query 247 TTCATGAGTTTGCTCAACTTA-TCAAAGGCAATGATGAATTCACTGAAGAAGAGAAGAAG 305
|| | || ||| |||| ||| |||||| | ||||| | |||||||||||||||
Sbjct 365 TTGAGGAATTTTCTCAG-TTAATCAAAGT-A--GATGA---C---GAAGAAGAGAAGAAG 414
Query 306 A-GGAAGAT-AATGGAAGCTTTTAGAATGTATATTGCTGATGGGGAAGATTGTATTACCC 363
| ||| | | || ||| || |||||| |||||||||| || || |||||||||||||| |
Sbjct 415 ATGGA-GCTCAAGGGA-GCGTTTAGACTGTATATTGCAGAAGGTGAAGATTGTATTACAC 472
Query 364 CG-GAAAGCTTGAAGATGATGCTAATGAAGCTAGGTGAGTCGAGAACCACTGATGATTGC 422
| ||| |||||||||||||||||| ||||||||| || || |||||||||||||||||
Sbjct 473 CAAGAA-GCTTGAAGATGATGCTAAAGAAGCTAGGAGAATCAAGAACCACTGATGATTGT 531
Query 423 AAAGTTATGATTCAA-GCTTTTGATAACAATGCTGATGGAGTTCTAAGCTTTGATGAGTT 481
| |||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 532 AGAGTTATGATT-AGTGCTTTTGATCTCAATGCTGATGGAGTTTTAAGCTTTGATGAGTT 590
Query 482 TGCTCTCATGATGCTTTAAGCTTTC-TTGTT 511
|||||| ||||||| ||||| | | |||||
Sbjct 591 TGCTCTTATGATGCGCTAAGCCTCCATTGTT 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24865902765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5