BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934751
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39795.1 | Symbols: | Mitochondrial glycoprotein family pro... 1199 0.0
> AT2G39795.1 | Symbols: | Mitochondrial glycoprotein family protein
| chr2:16596987-16598162 FORWARD LENGTH=926
Length=926
Score = 1199 bits (649), Expect = 0.0
Identities = 747/795 (94%), Gaps = 3/795 (0%)
Strand=Plus/Plus
Query 1 ATCAATCAAATCGAATCACCATGGCTTTAGCTTGGTGCGTTGTACGCAGGTCAGCATCTA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 ATCAATCAAATCAAATCACCATGGCTTTAGCTTGGTGCGTTGTACGCAGGTCAGCATCTA 79
Query 61 AGTTTGCTTCCGTTTATGGTGGTCGAGTCCGATCTATCTCCGCCGTTGTGAACCGCGCGT 120
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct 80 AGTTTGCTTCCGTTTATGGTGGCCGAGTCCGATCTATCTCCGCCGTTGCGAACCGCGCCT 139
Query 121 CTCTAGCTCGCAACCCATCTCCGGTTCGTCCATTGGTCTCTCGCGGCTTTAATTACTCGA 180
|||||||||||||||||||| | |||||||||| |||||||||| ||| ||||||||||
Sbjct 140 CTCTAGCTCGCAACCCATCTTCAATTCGTCCATTCGTCTCTCGCGCCTTAAATTACTCGA 199
Query 181 CGGCTATTGATCGAATGAGCTCCGAGCAATCACTTATCCGAGTTATCGACTCCGAGATCA 240
|||||||||||||||| |||||||||||| | |||||||||||||| |||||||| ||||
Sbjct 200 CGGCTATTGATCGAATTAGCTCCGAGCAAACGCTTATCCGAGTTATTGACTCCGAAATCA 259
Query 241 ATTCTGCTTCGCAAACCGATAATATCGATTTGGATGAAGAGATAACTCCAGGAAGCTTTC 300
| ||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 260 ACTCTGCTTTGCAATCCGATAATATCGATTCGGATGAAGAGATGACTCCAGGAAGCTTTC 319
Query 301 CTTTTAGAATTGAAGACAATCCTGGACATCAGAATGTAACATTGACTAGAGACTACAATG 360
||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 320 CTTTTAGAATTGAAGACAAACCTGGAAATCAGAATGTTACATTGACTAGAGACTACAATG 379
Query 361 GGGAACATATTAAAGTTGTAGTTAGCATGCCTAGTCTTGTTTCAgatgaaaatgatgatg 420
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 380 GGGAACATATTAAAGTTGTTGTAAGCATGCCTAGTCTTGTTTCAGATGAAAATGATGATG 439
Query 421 atgctgatgatgatgaAGGTCCTAGTAATGAATCAAGTATTCCATTAGTTGTGACTGTTA 480
||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 440 ATGATGATGATGATGAAGGTCCTAGTAATGAATCGAGTATTCCACTAGTTGTGACTGTTA 499
Query 481 CCAAGAAGAGTGGACTCAGCT-TAGAGTTTAGCTGTATGGCTTTTCCAGATGAGATTGCT 539
| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 500 CTAAGAAGAGTGGACTCA-CTCTAGAGTTTAGCTGTATGGCTTTTCCTGATGAGATTGCT 558
Query 540 ATAGATGCTTTATCTGTGAAACATCCTGGGGATTCTTTGGAGGAACAAATGGCAAATGAA 599
|||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||
Sbjct 559 ATAGATGCTTTATCTGTGAAACATCCTGGGGACTCTTTGGAGGATCAACTGGCTAATGAA 618
Query 600 GGGCCTGATTTCGAAGACTTGGACGAGAATCTGAAGAAGACGTTCTACAAGTTTTTGGAG 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GGGCCTGATTTTGAAGACTTGGACGAGAATCTGAAGAAGACGTTCTACAAGTTTTTGGAG 678
Query 660 ATCAGAGGGGTGAAAGCTAGCACGACGAATTTCCTGCACGAGTACATGATGAGGAAAGTG 719
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 679 ATCAGAGGAGTGAAAGCTAGCACGACGAATTTCCTGCACGAGTACATGACGAGGAAAGTG 738
Query 720 AACCGAGAGTACTTGTTATGGTTGAAGAATGTTAAGGAATTTATGGAAGAGTGAAT-GTA 778
|||||||||||||| ||||||||||||||||||||||| || |||||| |||||| ||
Sbjct 739 AACCGAGAGTACTTTTTATGGTTGAAGAATGTTAAGGAGTTCATGGAACAGTGAAACGTT 798
Query 779 AGGTCGTTAGCTAAG 793
|||| | ||||||||
Sbjct 799 AGGTTGATAGCTAAG 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5