BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934753
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39805.2 | Symbols: | Integral membrane Yip1 family protein... 1411 0.0
> AT2G39805.2 | Symbols: | Integral membrane Yip1 family protein
| chr2:16609915-16612554 REVERSE LENGTH=1333
Length=1333
Score = 1411 bits (764), Expect = 0.0
Identities = 834/868 (96%), Gaps = 4/868 (0%)
Strand=Plus/Plus
Query 7 TTTTCTCGTTGTTCAATGGATGAGTCGTTCGCTAATCTACAAACGAGCCATTTGCTTGGT 66
||||||| ||| || ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 187 TTTTCTCTTTGATCGATGGATGAGTCGTTCGCTAATCTACAATCAAGCCATTTGCTTGGT 246
Query 67 TCAGTTCCGGCTGTGATCAGCGACGACAAGAGAAGCACAAATGTACCAATAGCAAGCGTA 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TCAGTTCCGGCTGTGATCAGCGACGACAAGAGAAGCACAAATGTACCAATAGCAAGCGTC 306
Query 127 AATGAAGGTCCTTCTGCTAA-CATGCAAATATTTCCACCAAATCTAGGAAACAATACAAA 185
|||||||| |||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct 307 AATGAAGGCCCTTCTGC-AAGCATGCAAATATTTCCACCGAATCTAGGAAACAATACAAA 365
Query 186 GGGTTATCAAACTCTTGAGAGTCCAACAGTAGAAGGACCAGAACTACAGCCATCAAACAA 245
||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct 366 GGGTTATCAAACTCTTGAGAGCCCAACAGTAGAAGGACCAGCACAACAGCCATCAAACAA 425
Query 246 CTGGAAGGGATTTTTTAACGTTTACTCATATACCCAATACTTCGACGTGGACACGGACGT 305
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 426 CTGGAAGGGCTTTTTTAATGTCTACTCATATACCCAATACTTCGACGTGGACACGGACGT 485
Query 306 TGTATTGAACAGATTGATGAGCTCGTTATATCCTACTAGTGGGGATTTTTTCAACAAGAT 365
||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 486 TGTTTTGAACAGATTAATGAGCTCTTTATATCCTACTAGTGGAGATTTTTTCAACAAGAT 545
Query 366 TGATGCAAACCCTGATTTGTATGGACTTGTCTGGATCTGCACTACGCTTGTGTTTGTGCT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TGATGCAAACCCTGATTTGTATGGACTTGTCTGGATCTGCACTACGCTTGTGTTTGTGCT 605
Query 426 TGCTTCTCTCGGAAATTGTGCCACGTATCTCGTGAAGAAACGAACCGACAGTAATGCTCC 485
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 606 TGCTTCTCTCGGAAATTGTGCTACATATCTCGTGAAGAAACGAACCGACAGTAATGCTCC 665
Query 486 TTGGATCTTTGATGTGAACTATATGAATTTGGCAGCATCTATAATCTATGGATATGCAAT 545
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 666 TTGGATCTTTGATGTGAACTATATGAATTTGGCAGCATCTATAATATATGGATATGCAAT 725
Query 546 AATTGTGCCTCTGGGATTTTATTTCT-CACTCCGTTATATGGGGTCCAAAGCTGATCTTC 604
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 726 AATTGTGCCTCTGGGATTTTATTT-TGCACTCCGTTATATGGGGTCCAAAGCTGATCTTC 784
Query 605 TAAGATTCTGGTGCCTCTGGGGATACTCTCTCTTCATCTTCGTTCCAACCTCTCTTCCAT 664
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 785 TAAGATTCTGGTGCCTTTGGGGATACTCTCTCTTCATTTTCGTTCCAACCTCTCTTCCAT 844
Query 665 TGCTTATTCCCGTAGAGTTTCTGAGATGGGTGATTATACTCTTAGCTGGTAGTGCATCAT 724
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TGCTTATTCCAGTAGAGTTTCTGAGATGGGTGATTATACTCTTAGCTGGTAGTGCATCAT 904
Query 725 CGTGCTTTGTTGCCCTGAATCTACGGTCCTACCTCGAGACGAACAATGATATCACGGTTG 784
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 905 CGTGTTTTGTTGCCCTGAATCTACGGTCTTACCTCGAGACGAACAATGATATCACGGTTG 964
Query 785 TAATGGCTGCAGCATTTGGTCTGCAAATGGTTCTTTCGATCTTCATCAAGGTCTGGTTCT 844
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 965 TAATGGCTGCAGCATTTGGTCTGCAAATGGTTCTTTCAATCTTCATCAAGGTCTGGTTCT 1024
Query 845 TTCCTTAATCTCCACGACACAGTCAACA 872
|||||||||||||| || || |||||||
Sbjct 1025 TTCCTTAATCTCCATGAGACGGTCAACA 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42548322509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5