BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934772

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39980.1 | Symbols:  | HXXXD-type acyl-transferase family pr...   577    3e-164
  AT2G39975.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: C2 calciu...   571    2e-162


> AT2G39980.1 | Symbols:  | HXXXD-type acyl-transferase family 
protein | chr2:16687673-16689956 REVERSE LENGTH=2284
Length=2284

 Score =  577 bits (312),  Expect = 3e-164
 Identities = 369/395 (93%), Gaps = 10/395 (3%)
 Strand=Plus/Minus

Query  15    ACAACAAGATGGACTTATTTGTAATGGTAGTTGGAGCATCAGGAATTGGCGACGGTGGTG  74
             |||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  2093  ACAA-AAAATGGACTTATTCGTAATGGTAGTAGGAGCATCAGGAATTGGCGACGGTGGTG  2035

Query  75    -ATAAGAAATACAACTACAAAG-TG-GTAGCTTGGACAAACGAAGATGATCGACGGCAAA  131
              | || |||||||||||| ||| || | ||||||||| ||||||||||||| ||| ||||
Sbjct  2034  AACAA-AAATACAACTAC-AAGTTGAG-AGCTTGGACTAACGAAGATGATCCACGCCAAA  1978

Query  132   CAAAGATTGTAACAACAAACGCAGATCCTGAGTTCCGTGAGGTTTTGCATCTTCCTCAAA  191
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1977  CAAAGATTGTGACAACAAACGCAGATCCTGAGTTCCGTGAGGTTTTGCATCTTCCTCAAA  1918

Query  192   ACAAGGCTGCATCGTTTCTCAATTTGGAGTTGTTCAGTGTAAATTCAGCTGACACTGACG  251
             ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1917  ACATGGCTTCATCTTTTCTCAATTTGGAGTTGTTCAGTGTAAATTCAGCTGACACTGACG  1858

Query  252   CAttttt-ttGTGGGAGGGCAAATACAGCATTGCCCATGAAGACAAATGCTAATGTGTAC  310
             |||||||  | |||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  1857  CATTTTTCAT-TGGGAGGGCAAATACAGCATTGCCCATGAAAACAAACGCTAATGTGTAC  1799

Query  311   CGTAAGGTCAAACTTGAGAACTTGGACACCAGTGGAAATATCGTAACTGTTGGTTATCTT  370
             |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1798  CGTAAGATCAAACTTCAGAACTTGGACACCAGTGGAAATATCGTAACTGTTGGTTATCTT  1739

Query  371   GAAGTTTATCTTGGCCTCGAGACTGGTTAAG-CAA  404
             ||||||||||||||||||||||||||||||| |||
Sbjct  1738  GAAGTTTATCTTGGCCTCGAGACTGGTTAAGGCAA  1704


> AT2G39975.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: C2 calcium-dependent 
membrane targeting (InterPro:IPR000008); BEST 
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40745.1); 
Has 7 Blast hits to 7 proteins in 2 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr2:16687871-16688248 FORWARD LENGTH=378
Length=378

 Score =  571 bits (309),  Expect = 2e-162
 Identities = 359/382 (94%), Gaps = 8/382 (2%)
 Strand=Plus/Plus

Query  23   ATGGACTTATTTGTAATGGTAGTTGGAGCATCAGGAATTGGCGACGGTGGTG-ATAAGAA  81
            ||||||||||| ||||||||||| |||||||||||||||||||||||||||| | || ||
Sbjct  1    ATGGACTTATTCGTAATGGTAGTAGGAGCATCAGGAATTGGCGACGGTGGTGAACAA-AA  59

Query  82   ATACAACTACAAAG-TG-GTAGCTTGGACAAACGAAGATGATCGACGGCAAACAAAGATT  139
            |||||||||| ||| || | ||||||||| ||||||||||||| ||| ||||||||||||
Sbjct  60   ATACAACTAC-AAGTTGAG-AGCTTGGACTAACGAAGATGATCCACGCCAAACAAAGATT  117

Query  140  GTAACAACAAACGCAGATCCTGAGTTCCGTGAGGTTTTGCATCTTCCTCAAAACAAGGCT  199
            || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  118  GTGACAACAAACGCAGATCCTGAGTTCCGTGAGGTTTTGCATCTTCCTCAAAACATGGCT  177

Query  200  GCATCGTTTCTCAATTTGGAGTTGTTCAGTGTAAATTCAGCTGACACTGACGCAttttt-  258
             |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  178  TCATCTTTTCTCAATTTGGAGTTGTTCAGTGTAAATTCAGCTGACACTGACGCATTTTTC  237

Query  259  ttGTGGGAGGGCAAATACAGCATTGCCCATGAAGACAAATGCTAATGTGTACCGTAAGGT  318
             | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct  238  AT-TGGGAGGGCAAATACAGCATTGCCCATGAAAACAAACGCTAATGTGTACCGTAAGAT  296

Query  319  CAAACTTGAGAACTTGGACACCAGTGGAAATATCGTAACTGTTGGTTATCTTGAAGTTTA  378
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CAAACTTCAGAACTTGGACACCAGTGGAAATATCGTAACTGTTGGTTATCTTGAAGTTTA  356

Query  379  TCTTGGCCTCGAGACTGGTTAA  400
            ||||||||||||||||||||||
Sbjct  357  TCTTGGCCTCGAGACTGGTTAA  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5