BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934773
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39980.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2305 0.0
> AT2G39980.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr2:16687673-16689956 REVERSE LENGTH=2284
Length=2284
Score = 2305 bits (1248), Expect = 0.0
Identities = 1415/1496 (95%), Gaps = 10/1496 (1%)
Strand=Plus/Plus
Query 1 ACCAACAAAAAGAAACAAAAATGCCTTCTTTAGAGAACTCTGTTACAATAAACTCAAGAA 60
|||||| || | ||||||||||||||||||||||||| ||||| ||||||| ||||||||
Sbjct 53 ACCAACGAATA-AAACAAAAATGCCTTCTTTAGAGAAATCTGTAACAATAATCTCAAGAA 111
Query 61 GCAGAGTCTTCCCAGACCAAAAGTCAACCCTCGTTGACCTCAAGCTCTCCGTCTCTGATC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 112 ACAGAGTCTTCCCAGACCAAAAGTCAACCCTCGTTGACCTCAAGCTCTCCGTCTCCGATC 171
Query 121 TTCCCATGCTCTCTTGCCACTACATCCAAAAAGGTTGTCTCTTCACGCGtcc-acacctt 179
|||||||||||||||||||||||||||||||||||||||| |||||| | || | |||||
Sbjct 172 TTCCCATGCTCTCTTGCCACTACATCCAAAAAGGTTGTCTTTTCACGTGCCCTA-ACCTT 230
Query 180 cctctccacgcgcttctctctcacctcaaacactcactctccatcactctctctcacttc 239
||||||| ||||||| |||| |||||||||||||| ||||| ||||||||| | ||||||
Sbjct 231 CCTCTCCCCGCGCTTATCTCACACCTCAAACACTCTCTCTCAATCACTCTCACCCACTTC 290
Query 240 cctcctctcgccggccgtctctcaacctcctcctccggccacgttttcctcACCTGCAAT 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CCTCCTCTCGCTGGCCGTCTCTCAACCTCCTCCTCCGGCCACGTTTTCCTCACCTGCAAT 350
Query 300 GACGCCGGCGCCGATTTCGTTTTCGCCGAAGCGAAATCCGTCCACGTGAGCGATGTGATC 359
||||||||||||||||| ||||||||| |||| |||||| ||||||||||||| ||||||
Sbjct 351 GACGCCGGCGCCGATTTTGTTTTCGCCCAAGCAAAATCCATCCACGTGAGCGACGTGATC 410
Query 360 GCCGGAATCGACGTTCCCAATGTAGTCAAAGAGTTTTTCACCTACGACAGAGCTGTGAGC 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GCCGGAATCGACGTTCCCGATGTAGTCAAAGAGTTTTTCACCTACGACAGAGCTGTGAGC 470
Query 420 TACGAGGGACATAACAGACCAATCCTCGCCGTTCAAGTAACGGAACT-AATTGACGGCGT 478
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 471 TACGAGGGACATAACAGACCAATCCTCGCCGTTCAAGTGACGGAACTGAA-CGACGGCGT 529
Query 479 TTTCATCGGGTGCTCTGTTAACCACGCCGTGACTGACGGAACCTCGCTGTGGAATTTCAT 538
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TTTCATCGGATGCTCCGTTAACCACGCCGTGACTGACGGAACCTCGCTGTGGAATTTCAT 589
Query 539 TAACACCTTCGCGGAGGTTTCTAGAGGTGTTAAGAATGTGACACGTCAGCCTGATTTTAC 598
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 590 TAACACCTTCGCGGAGGTTTCTAGAGGTGCTAAGAATGTGACACGTCAGCCTGATTTTAC 649
Query 599 GCGGGAGTCTGTGCTAATCTCACCGGCTGTGCTCAAAGTCCCTCAAGGTGGTCCTAAGGT 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 650 GCGGGAGTCTGTGCTAATCTCACCGGCTGTGCTCAAAGTCCCTCAAGGTGGTCCAAAGGT 709
Query 659 GACGTTTGACGAAAAGGCGCCGTTACGTGAACGGATTTTCAGTTTTAGCAAAGAATCGAT 718
||| ||||||||||| |||||||||||||||||||| |||||||| || | |||||||||
Sbjct 710 GACATTTGACGAAAACGCGCCGTTACGTGAACGGATATTCAGTTTCAGTAGAGAATCGAT 769
Query 719 TCAAGAGCTTAAAGCTGCGGTGAACAAGAAGAAATGGTTGACGGTTAATAACGGCGAAGT 778
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 770 TCAAGAGCTTAAAGCTGTGGTGAACAAGAAGAAATGGTTGACGGTTGATAACGGCGAAAT 829
Query 779 AGACGGTGTTGAGTTGTT-GGGAAAGCAAAGCAACGATAAACTTAACGGAAAAGAAAACG 837
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 830 AGACGGTGTTGAGTTGTTAGGGAAA-CAAAGCAACGATAAACTTAACGGAAAAGAAAACG 888
Query 838 GTATATTAACGGAAATGTTAGAGAGTTTGTTTGGAAGAAACGACGCCGTTTCGAAACCCG 897
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 889 GTATTTTAACGGAAATGTTGGAGAGTTTGTTTGGGAGAAACGACGCCGTTTCGAAACCCG 948
Query 898 TTGTGGTTGAGATCTCGTCGTTCCAGTCTCTATGTGCGTTGCTTTGGCGTGCGATCACTC 957
| | |||||||||||||||||| || |||||||| ||||||||||||||||||||||| |
Sbjct 949 TCGCGGTTGAGATCTCGTCGTTTCAATCTCTATGCGCGTTGCTTTGGCGTGCGATCACAC 1008
Query 958 GTGCGAGGAAGCTTCCGAGTTCAAAAACGACTACGTTTCGTATGGCTGTAAATTGTCGCC 1017
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 1009 GTGCGAGGAAGCTTCCGAGTTCGAAAACGACTACGTTTCGTATGGCTGTGAATTGTCGTC 1068
Query 1018 ACCGGTTAAGTCCTAAGTTGAATCCGGAGTATTTCGGAAACGCGATTCAGAGCGTTCCGA 1077
|||| || |||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1069 ACCGTTTGAGTCCTAAACTGAATCCGGAGTATTTCGGAAACGCGATTCAAAGCGTTCCTA 1128
Query 1078 CGTTTGCGACTGCGGGGGAGGTTTTGTCTCGTGATCTTAAATGGTGCGCCGATCAGCTTA 1137
||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1129 CGTTTGCGACTGCGGCAGAGGTTTTGTCACGTGATCTTAAATGGTGCGCTGATCAGCTTA 1188
Query 1138 ACCAGAGTGTTGCGGCTCATCAAGACGGGAGGATTCGTAGCGTTGTGGCGGATTGGGAAG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 ACCAGAGTGTTGCGGCTCATCAAGACGGGAGGATTCGTAGCGTTGTGGCGGATTGGGAAG 1248
Query 1198 CGAATCCTC-GGTGTTTTCCTCTTGGAAATTCTGACGGAGCTTCGGTTACTATGGGAAGC 1256
||||||| | |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1249 CGAATCC-CAGGTGTTTTCCTCTTGGAAATGCCGACGGAGCTTCGGTTACTATGGGAAGC 1307
Query 1257 TCGCCGAGGTTTCCGATGTATGATAATGATTTTGGGTGGGGAAGACCGGTGGCGGTTAGA 1316
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1308 TCTCCGAGGTTTCCGATGTATGATAATGATTTCGGGTGGGGAAGGCCGGTGGCGGTTAGA 1367
Query 1317 AGCGGACGGTCGAATAAGTTTGACGGGAAGATTTCGGCGTTTCCGGGGAGGGAAGGAAAC 1376
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1368 AGTGGACGGTCGAATAAGTTTGATGGGAAGATTTCGGCGTTTCCGGGGAGGGAAGGAAAC 1427
Query 1377 GGGACTGTTGATTTGGAGGTGGTTTTATCGCCGGAGACTATGGCTGGGATTGAATCTGAC 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 GGGACTGTTGATTTGGAGGTGGTTTTATCGCCGGAGACTATGGCTGGGATTGAATCTGAC 1487
Query 1437 AGTGAGTTTATGCGATACGTGACTAAAAAGTAACGGAGTTTATGGATTAATAACGT 1492
||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1488 GGTGAGTTTATGCGATACGTGACTAATAAGTAACGGAGTTTATGAAT-AATAACGT 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73593998970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5