BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934782

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40020.3 | Symbols:  | Nucleolar histone methyltransferase-r...   392    2e-108


> AT2G40020.3 | Symbols:  | Nucleolar histone methyltransferase-related 
protein | chr2:16710979-16713018 FORWARD LENGTH=995
Length=995

 Score =  392 bits (212),  Expect = 2e-108
 Identities = 242/256 (95%), Gaps = 3/256 (1%)
 Strand=Plus/Plus

Query  7    AGAAGCCTGGATTGATGCGAGAGGATGCAGCACGAGATCGCATGAGAGTTTTTGGGTTTC  66
            ||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  130  AGAAGGCTGGATTGATGCGAGAGGATGCAGCACGAGATCGCATGAGAGGATTTGGGTTTC  189

Query  67   ATGAGCGTGTTATCAGTGAGAGTATTAAGGAACTGTTAGAGGTCTATGGTGAAGACCAAT  126
            |||||| |||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct  190  ATGAGCATGTTATCAGTGAGAGTATTAAGGAACTGTTAGAGGTCTA---CGAAGACCAAT  246

Query  127  GGTTTTTGATTGAAGATGATAGCTATGGTCCCCTCCTCGCTATCTGCCTTGAAAAGCAAG  186
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  247  GGTTTTTGATTGAAGATGATAGCTATGGTCCCCTCCTTGCTATCTGCCTTGAAAAGCAAG  306

Query  187  CGGAAAAAGACAAACAATTGGCTGAAGTCCAAGCCTACCAATTGCCTGAGAATCAAAATG  246
             ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct  307  AGGAAAAAGAGAAACAATTGGCTGAAGTACAAGCCAACCAATTGCCTGAGAATCACAATG  366

Query  247  AAGAGATGGCTGAGGA  262
            ||||||||||||||||
Sbjct  367  AAGAGATGGCTGAGGA  382


 Score =  226 bits (122),  Expect = 2e-58
 Identities = 142/151 (94%), Gaps = 4/151 (3%)
 Strand=Plus/Plus

Query  355  AGGAGCAGGAGCAGGACATGCAAATTGAGTATGGAAGAGACCAAGCTGATGAGTTATCAA  414
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  427  AGGAGCAGGAGCAGGACATGCATATTGAGTATGGAAGAGACCAAGCTGATGAGTTATCAA  486

Query  415  TCAATAGCGATGCAGTCA-TGGACCCATCACCAGCAGCT-TTACATTTGGGAGAAGCATC  472
            |||||||||| ||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct  487  TCAATAGCGAAGCAGTCAATG-ACCCATCACCAGCAGCTATT-CATTTGGGAGAAGCATC  544

Query  473  AGCAGATTATGCACAAGGTTCTGTTGGAGGT  503
            | |||||||||||||| |||||||| |||||
Sbjct  545  ATCAGATTATGCACAAAGTTCTGTTCGAGGT  575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26372927175


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5