BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934787

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40080.1 | Symbols: ELF4 | Protein of unknown function (DUF1...   606    4e-173


> AT2G40080.1 | Symbols: ELF4 | Protein of unknown function (DUF1313) 
| chr2:16734294-16734912 REVERSE LENGTH=619
Length=619

 Score =  606 bits (328),  Expect = 4e-173
 Identities = 369/387 (95%), Gaps = 9/387 (2%)
 Strand=Plus/Plus

Query  2    AAAACACAATTAAAAATTATTATGAAGAGGAACGGCGAGACGAAACGGCGGAGGAACGTG  61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  12   AAAACACAATTAAAAATTATTATGAAGAGGAACGGCGAGACGAAACGGCGGAGGAACGTG  71

Query  62   GCGGAGGAAGCAGAGCAGGGAGGAGGAGGAGAAGATCCAGCGATGTGGGAGAATCTTGAC  121
            |||||||| |||||||    | | ||| |||  ||||| |||||||||||||||||||||
Sbjct  72   GCGGAGGAGGCAGAGC----A-G-GGA-GAG--GATCCGGCGATGTGGGAGAATCTTGAC  122

Query  122  CGGAATTTCAGACAAGTGCAATCAGTTTTGGACAGAAACAGATCACTGATTCAACAAGTC  181
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  123  CGGAATTTCAGACAAGTGCAATCAGTTTTAGACAGAAACAGATCACTGATTCAACAAGTC  182

Query  182  AACGACAATCACCAATCGAGAATGGCTGATAACATGTCGAAGAACGTTGCTTTGATTCAA  241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  AACGACAATCACCAATCGAGAATGGCTGATAACATGTCGAAGAACGTTGCTTTGATTCAA  242

Query  242  GAACTCAACGGAAACATTTCCAAGGTTGTTAACATGTATTCTGATCTCAATACTAGTTTC  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GAACTCAACGGAAACATTTCCAAGGTTGTTAACATGTATTCTGATCTCAATACTAGTTTC  302

Query  302  TCATCGGGGTTTCACGGTGGAAAGAACGGTCACGACGGTGGTGGTGCTGCCGGAACAAGA  361
            || ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct  303  TCGTCGGGCTTTCACGGTGGGAAGAACGGTCACGATGGTGGTGGTGCTGCCGGAACTAGA  362

Query  362  GCTTAATGAACCCGAATCAAATTGTTT  388
            |||||||||||| ||||||||||||||
Sbjct  363  GCTTAATGAACCGGAATCAAATTGTTT  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5