BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934788

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40050.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   370    9e-102


> AT2G40050.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr2:16723881-16725774 REVERSE LENGTH=1894
Length=1894

 Score =  370 bits (200),  Expect = 9e-102
 Identities = 341/405 (84%), Gaps = 26/405 (6%)
 Strand=Plus/Plus

Query  190  AATTCTTCCCCCGAGTACGTC-TTCCCTACAACAACGGAT-TC-CAATGATCATCATGTA  246
            ||||||||||||||||||||| || | |||||| ||| |  || || |||||||||||||
Sbjct  219  AATTCTTCCCCCGAGTACGTCCTTTC-TACAACGACG-ACCTCTCA-TGATCATCATGTA  275

Query  247  CTTCCTTTGTTTTGGTGCAACAATAAAGAATTTGATA-TCGATGGTGGGTGCGACATGTG  305
            || |||||||||||||||||||||||||||||||||  | |||||||| ||| |||| ||
Sbjct  276  CTCCCTTTGTTTTGGTGCAACAATAAAGAATTTGATGCT-GATGGTGGATGCTACATATG  334

Query  306  TGAAGGCTCAAATTTCGGCACAGACTATTACTTCTGTATC-ATT-TATG-ATGAAAAATT  362
             ||||||||||||| |||||| |||||||| ||||| | | ||| || | || |||| ||
Sbjct  335  CGAAGGCTCAAATTCCGGCACCGACTATTATTTCTGCAACTATTGTA-GCAT-AAAA-TT  391

Query  363  CCATAGAGAATGCGTCCAGTCTCCTCTTAAAATCAAACACCCTTACCACCCTGAGCATTC  422
             || | ||||||| | || ||||| |||| ||||||||| ||||||||||||||||| | 
Sbjct  392  ACACAAAGAATGCATTCAATCTCCACTTATAATCAAACATCCTTACCACCCTGAGCACTA  451

Query  423  TCTCCAACTTTCCTTTCAT--T--T---TTTC-TCCAATATTGAGTGTTTATGTTGTAGA  474
            ||||||||||| |||||||  |  |   |||| |  || |||||||||||||||||| ||
Sbjct  452  TCTCCAACTTTTCTTTCATGATGATAACTTTCGT--AAGATTGAGTGTTTATGTTGTGGA  509

Query  475  AGAAGAGCATATATG-TTGGTTTATCATTGTACCATATGTCAGGCTTTTATGCATCCAAC  533
            |||| |||| || || ||| |||||||||| |||| ||| ||||||||||||||||| | 
Sbjct  510  AGAAAAGCACAT-TGGTTGATTTATCATTGCACCACATGCCAGGCTTTTATGCATCCCAT  568

Query  534  ATGTGCGATGAAGCCAATACCCTTTATTATAGACCCACCAAAAAA  578
            ||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct  569  ATGTGCGATGAAGCCAATACCTTTTCTTATAGACCCACCAAAAAA  613



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29236273554


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5