BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934793

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40110.1 | Symbols:  | Yippee family putative zinc-binding p...   715    0.0  


> AT2G40110.1 | Symbols:  | Yippee family putative zinc-binding 
protein | chr2:16747940-16749545 FORWARD LENGTH=800
Length=800

 Score =  715 bits (387),  Expect = 0.0
 Identities = 414/427 (97%), Gaps = 1/427 (0%)
 Strand=Plus/Plus

Query  1    TGTTCTTGA-TTTGATTCAAGATGGGGAGGCTGTTTGTGGTTAATCTTGAAGGGAAGATC  59
            ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  199  TGTTCTTGATTTTGATTCAAGATGGGGAGGCTGTTTGTGGTGAATCTTGAAGGGAAGATC  258

Query  60   TATAGCTGCAAACACTGTAAGACTCATCTTGCTACTTATGAAGACATCATCTCCAAGTCT  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  TATAGCTGCAAACACTGTAAGACTCATCTTGCTACTTATGAAGACATCATCTCCAAGTCT  318

Query  120  TTTCACTGCAAGCATGGGAAGGCTTATCTCTTCAATAAGGTTGCCAATGTTTCAATTGGA  179
            |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  319  TTTCACTGCAAGCATGGGAAAGCTTATCTCTTCAATAAGGTTGCCAATGTTTCCATTGGA  378

Query  180  GAGACTGAAGAAAGACTGATGATGACTGGAAAACATACTGTGGCTGACATTTTCTGTGTC  239
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  379  GAGACTGAAGAAAGACTGATGATGACTGGTAAACATACTGTGGCTGATATTTTCTGTGTC  438

Query  240  TCGTGTGGATCAATCGTTGGCTGGAGATACGAGACTGCTCATGAGAAGAATCAGAAGTAC  299
            ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct  439  TCGTGTGGATCAATCGTTGGCTGGAAATACGAGACTGCTCATGAGAAGAACCAGAAGTAC  498

Query  300  AAGGAAGGAAAATCTGTTCTTGAAAGATTTAAGATATCGGGTCCTGATGGGAGCAACTAT  359
            || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  499  AAAGAAGGAAAATCAGTGCTTGAAAGATTTAAGATATCGGGTCCTGATGGGAGCAACTAT  558

Query  360  TGGGTGAGTAGTCATGGAAGGCATATTGGTGGAAGTGATGCAGATGATGCTTGAATCATC  419
            ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  559  TGGGTGAGTAGCCATGGAAGGCATATAGGTGGAAGTGATGCAGATGATGCTTGAATCATC  618

Query  420  TCTCTCT  426
            |||||||
Sbjct  619  TCTCTCT  625



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20609777090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5