BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934805

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40170.1 | Symbols: ATEM6, GEA6, EM6 | Stress induced protei...   475    9e-134


> AT2G40170.1 | Symbols: ATEM6, GEA6, EM6 | Stress induced protein 
| chr2:16779552-16780258 REVERSE LENGTH=610
Length=610

 Score =  475 bits (257),  Expect = 9e-134
 Identities = 303/325 (93%), Gaps = 4/325 (1%)
 Strand=Plus/Plus

Query  3    TTGTTGCAAGTAAGTAAAGAGCCATGGCGTCTCAGCAAGAGAAGAAGCAGCTGGACGAGA  62
            ||| || |||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct  70   TTG-TGTAAGTAACTAAAGAGCCATGGCGTCTCAACAAGAGAAGAAGCAGCTGGATGAGA  128

Query  63   GAGCAAAGAAGGGAGAGACCGTCGTGCCAGGTGGCACTGGAGGCAAAAGCTTCGAAGCTC  122
            | ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct  129  GGGCAAAGAAGGGCGAGACCGTCGTGCCAGGTGGTACGGGAGGCAAAAGCTTCGAAGCTC  188

Query  123  AACAACATCTCGCTGAAGGGAGGAGCCGAGGAGGGCAAACTCGGAAGGAGCAGTTAGGAA  182
            |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  189  AACAGCATCTCGCTGAAGGGAGGAGCCGAGGAGGGCAAACTCGAAAGGAGCAGTTAGGAA  248

Query  183  CTGAAGGATACCAGGAGATGGGACGTAAAGGTGGTCTTAGTACCGGAGACAAGCCTGGTG  242
            |||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct  249  CTGAAGGATATCAGCAGATGGGACGCAAAGGTGGTCTTAGCACCGGAGACAAGCCTGGTG  308

Query  243  GTGAAAACGCTGAGGATGAAGGAGTCGAGATAGACGAATCCAAATTCAGGACCAAGACCT  302
            | ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  309  GGGAACACGCTGAGGAGGAAGGAGTCGAGATAGACGAATCCAAATTCAGGACCAAGACCT  368

Query  303  AAATCGAACT-CCCCAC--GGATGT  324
            ||||| |||| ||||||  ||||||
Sbjct  369  AAATCAAACTTCCCCACACGGATGT  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5