BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934808

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35560.2 | Symbols:  | Transducin/WD40 repeat-like superfami...   278    3e-74


> AT4G35560.2 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr4:16881362-16887083 FORWARD LENGTH=3558
Length=3558

 Score =  278 bits (150),  Expect = 3e-74
 Identities = 163/169 (96%), Gaps = 1/169 (1%)
 Strand=Plus/Plus

Query  4     GGCTTAGTAAGCAGAAGATGGTGAATAGGTTTAGCAATTTCAAAGGTAAGCTGAAACAGA  63
             |||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct  3013  GGCTTAGTAAACAGAAGATGGCGAATAGGTTTAGTAATTTCAAAGGTAAGCTGAAACAGA  3072

Query  64    TGGCAGCTAAGAATGAGAAGAGTGTTGTAACCAATGA-GAAAAGCATGAGGAGAAAAACG  122
             ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  3073  TGGCAGCTAAGAATGAGAAGAGTGTTGTAACCAATGACGAGAAGCATGAGGAGAAAAACG  3132

Query  123   GCGCCACAGTTGATCAGATCAAGAAGAAATACGGGTTTAACTCGTCCGA  171
             ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  3133  GCGCCACAGTTGATCAGATCAAGAAGAAATACGGGTTTACCTCGTCCGA  3181


 Score =  198 bits (107),  Expect = 2e-50
 Identities = 115/119 (97%), Gaps = 0/119 (0%)
 Strand=Plus/Plus

Query  171   AGCTTGAGGACGACGGAAATGGAAGATACTGCAAAGTCTTTCTCCTCTACGGCAAAGGAA  230
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3249  AGCTTGAGGACGACGGAAATGGAAGATACTGCAAAGTCTTTCTCCTCTACGGCAAAGGAA  3308

Query  231   CTACTAAGTGTTGTTGAGTTCAATAAACAGAGCTCAAAATCTTAGCATTCTTTTTCTCT  289
             |||||||  | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  3309  CTACTAAACGCTGTTGAGTTCAATAAACAGAGCTCAAAATCTTAGCACTCTTTTTCTCT  3367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13622559979


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5