BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934816
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40240.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1580 0.0
> AT2G40240.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:16811026-16812228 FORWARD LENGTH=1203
Length=1203
Score = 1580 bits (855), Expect = 0.0
Identities = 971/1027 (95%), Gaps = 8/1027 (1%)
Strand=Plus/Plus
Query 3 ATCAATTTGTGAAACTCAATGTCTCTTCTCCGGCGACGATTTATGAAACAATCAGTTAAT 62
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 8 ATCAATTTGGGAAACTCAATGTCTCTTCTCCGGCGACGATTCGTGAAACAATCAGTTAAT 67
Query 63 TCCAGAACATTCCTTCATATCCTCGCCGATCGATCGTTCTCCACCGTGAAGATTCCTTCA 122
| || |||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 68 TGCATAACATTCCTTCAAATCCTCGCCGAGCGATCCTTCTCCACCGTGAAGATTCCTCCA 127
Query 123 GGCCGTCGCAAAACCACCGAATTCGACAAACTTATCAACGAAGCTGGCAGCTCCGGCGAT 182
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GGTCGTCGCAAAACCACCGAATTCGACAAACTTATCAACGAAGCTGGCAGCTCCGGCGAT 187
Query 183 TTCGAGACCGTACGCCGTCTTCTAAACAACCGTATAGTGCTCGGATCTTTCAACACGAGC 242
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 188 TTCGAGACCGTACGCCGTCTCCTAAACAACCGTATAGTTCTCGGATCTTTCAACACGAGC 247
Query 243 GAAACTTTCAAATTCCTCACAAACACCGTC-TCATACTCCTCCGCTTTAGAAGATATCCG 301
|| || |||||||||||||| ||||||| | |||||||||||| |||||||||| ||||
Sbjct 248 GACACATTCAAATTCCTCACCAACACCG-CTTCATACTCCTCCTATTTAGAAGATCTCCG 306
Query 302 CCGTGTTTTACCTCAGATCGACGGCGGTTTCTCGCGGAAAAACGCTTACGACATTTTAAT 361
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CCGCGTTTTGCCTCAGATCGACGGCGGTTTCTCGCGGAAAAACGCTTACGACATTTTAAT 366
Query 362 CTCTCGTCTCTGCAAGCTCGGCCGCATCGACGACGCGTTAATCGTGATCGGAGATATGTC 421
|||||||||||| |||||||| |||||||||||||| |||||||| |||||||| |||||
Sbjct 367 CTCTCGTCTCTGTAAGCTCGGACGCATCGACGACGCTTTAATCGTTATCGGAGACATGTC 426
Query 422 TAACGGGAGATCAGGCTTAACGCCGTCGACATTTCACCCGATTTTGTGCTCGCTCACGAG 481
||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 427 TAACGGGAGATTAGGCTTAACGCCGTCGACATATCACCCGATCTTGTGCTCGCTCACGAG 486
Query 482 GAAGAACAAAATCGAAGAGGCTTGGCGAGTTGTTGAATCGATGAGATCCAAATCCGTTCC 541
|||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |
Sbjct 487 GAAGTACAAAATCGAAGAAGCTTGGAGAGTTGTTGAATCGATGAGATCCAAATCGGTTTC 546
Query 542 GATGGATGTGACGGCGTACAACTACTTCCTTACTTCGCATTGTTACGACGGCGAAATGGA 601
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 547 GATGGATGTGACGGCGTACAATTACTTCCTTACTTCGCATTGTTACGACGGCGAATTGGA 606
Query 602 ATCGGCGAGCGAGGTGATGCGTAAGATTGAAGAAGACGGG-A-TCCCTACGGATTCGCGT 659
|||||| ||||||||||||||||||||||||||||||||| | || | |||||||||||
Sbjct 607 ATCGGCTAGCGAGGTGATGCGTAAGATTGAAGAAGACGGGAATTCGC--CGGATTCGCGT 664
Query 660 AGCTACGACGCGCTTGTACTCGGCGCGTGTAGGGCTGGG-AAAGTGGAAGCGGCGATGGC 718
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 665 AGCTACGACGCGCTTGTGCTCGGCGCGTGTAGGGC-GGGTAAAGTGGAAGCGGCGATGGC 723
Query 719 GATATTGAGGAGGATGGAGGAGGATTGTGTGACTGTGTTGTACTCGACGCATGCGCACGT 778
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 724 GATATTGAGGAGGATGGAGGAGGATGGTGTGACTGTGTTGTACTCGACGCATGCGCACGT 783
Query 779 TATAGCGGGGTTGGTGGAGGGAGGCTATTATGCGCTGGGTTTGGAGTTTGTGATGGCTTA 838
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TATAACGGGGTTAGTGGAGGGAGGCTATTATGCGCTGGGTTTGGAGTTTGTGATGGCTTA 843
Query 839 CGCCGGAAAAGATTTGGGGTTGGATAGTGAGAGTTTTGGGTTTTTGGCTGGTAAGCTTGT 898
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 844 CGCCGGAAAAGATTTGAGGTTGGATAGTGAGAGTTTTGGTTTTTTGGCTGGTAAGCTTGT 903
Query 899 GAAGAGGAAGAGATTTGAAGAAGCCAAGATTGTTGTGAAAGAGATGGTTATGAGAGGATT 958
|||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 904 GAAGAGGAAGAGGTATGAAGAAGCGATGATTGTTGTGAAAGAGATGGTTATGAGAGGATT 963
Query 959 GAGAATGGGTGATGAATTGAGACAATTCTATGAAGGAAATGTGAGAAACGATGATGATGA 1018
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 964 GAGAATGGGTGATGAATTGAGACAATTCTATGAAGGAAATGTGAGATACGATGATGATGA 1023
Query 1019 TGAAGAT 1025
|||||||
Sbjct 1024 TGAAGAT 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51841639704
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5