BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934822
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40270.1 | Symbols: | Protein kinase family protein | chr2:... 1855 0.0
AT3G56050.1 | Symbols: | Protein kinase family protein | chr3:... 656 0.0
> AT2G40270.1 | Symbols: | Protein kinase family protein | chr2:16821934-16824506
REVERSE LENGTH=1851
Length=1851
Score = 1855 bits (1004), Expect = 0.0
Identities = 1243/1351 (92%), Gaps = 46/1351 (3%)
Strand=Plus/Plus
Query 65 GAAAGCTTTTGGATTTCACAGGAAAACACTTGTCCGTTACCCTTACAAAGATTTACCTTC 124
||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 332 GAAAGCTTTTGGATTTCACAGGAAAACACTTGTCCGTAACCCTTACAAAGACTTGCCTTC 391
Query 125 GAGAAAAGACCGCAAAAACCGTGTTGTGGCTGCAACTATAACACCATCATCGTCACCACA 184
||||||||||||||||||||||||||||||||||||| |||||||||||| || ||| |
Sbjct 392 AAGAAAAGACCGCAAAAACCGTGTTGTGGCTGCAACTACAACACCATCATCATCCCCAGA 451
Query 185 ACCTTCTCCTAAACATGTTTCAACTAAATCTTCAACAGTTCCGGAGCCACAAAAGAGATC 244
|||| |||| |||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 452 ACCTGCTCCAAAACATGTTTCAACTAAAGCTTCAACAGTTTCAGAGCCACAAAAGAGATC 511
Query 245 ATCTACACAAGATGTTTCACCTTCTCCTTCGGTGTCACTTGTAAATC-CTTCCACTCCAA 303
||||||||||||||||||||||||||| || | | |||||| ||| | || ||| |||||
Sbjct 512 ATCTACACAAGATGTTTCACCTTCTCCATCTGCGCCACTTGCAAA-CTCTCCCATTCCAA 570
Query 304 GAAACGCACATTCTTCTTCAGTGGCTGTTCCTTTAGTAGTTGGCTGCGTAGGCGGTGCCT 363
||||| | || ||| | | ||||||||||||| |||||||||||||||||||| |
Sbjct 571 GAAACTCTCA---TTC-T---T--CTGTTCCTTTAGTTGTTGGCTGCGTAGGCGGTGCTT 621
Query 364 TTTTTCTTCTCCTTGTAGCTACCGGTCTCTACTTTTTCACTAGTAAGGCCGGGAAAACTG 423
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 622 TTTTTCTTCTCCTTGTAGCTACCGGTCTCTACTTTTTCACAAGTAAGGCCGGGAAAACTG 681
Query 424 TGAATCCTTGGCGTACTGGTCTTAGTGGACAAC-TCAG--A--A------A---GTATT- 468
||||||||||||||||||||||||||||||||| |||| | | | |||||
Sbjct 682 TGAATCCTTGGCGTACTGGTCTTAGTGGACAACTTCAGAAAGTATTCGTTACTGGTATTC 741
Query 469 C-GT--T------A-CT--GATTGAAGCTGCATGTGAAGATTTTAGTAATGTCATTGGAT 516
| || | | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CTGTACTCAAAAGATCTGAGATTGAAGCTGCATGTGAAGATTTTAGTAATGTCATTGGAT 801
Query 517 CTTGCCCCATTGGGAAATTGTTCAAAGGAACATTATCAAGTGGAGTGGAGATTGCTGTTG 576
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CTTGTCCCATTGGGAAGTTGTTCAAAGGAACATTATCAAGTGGAGTGGAGATTGCTGTTG 861
Query 577 CTTCTTTTGCTACTACCT-CTGCCAAAGACTGGAAGGACAATACAGAAATTCACTTTAGG 635
||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||
Sbjct 862 CTTCTTTTGCTACTA-CTACTGCCAAAGACTGGAAGGACAGTACAGAAATTCACTTCAGG 920
Query 636 AAGAAGATCGAAATGTTATCGAAGATCAACCACAAGAATTTTGCAAACCTTCTTGGGTAT 695
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 921 AAGAAGATCGAAATGTTATCGAAGATCAACCACAAGAATTTTGCAAACCTTCTTGGTTAT 980
Query 696 TGTGAAGAAAAGGAACCTTTCGCTAGGATCTTGATCTTTGAGTATGCTCCAAATGGATCA 755
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 981 TGTGAAGAAAAGGAACCTTTCACCAGGATCTTGATCTTTGAGTATGCTCCAAATGGATCA 1040
Query 756 CTCTTTGAGCATTTACACTT-TAAAGAATCAGAACACTTGGATTGGGGAATGCGGTTAAG 814
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1041 CTCTTTGAGCATTTACA-TTATAAAGAATCAGAACACTTGGATTGGGGAATGCGGTTAAG 1099
Query 815 AATTGCAATGGGATTAGCATATTGCCTTGACCATATGCACCAACTCAATCCACCTATAGC 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AATTGCAATGGGATTAGCATATTGCCTTGACCATATGCACCAACTCAATCCACCTATAGC 1159
Query 875 TCACACCAATCTCGTCTCGTCATCTCTTCAGCTCACAGAGGATTATGCTGTCAAAGTATC 934
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TCACACCAATCTCGTCTCATCATCTCTTCAGCTCACAGAGGATTATGCTGTCAAAGTATC 1219
Query 935 GGATTTCAGTTTCGGTCCATCTGAGACAGAGACTAGCATCAACGACA-CA--GTCATAGA 991
||||||||||||||| |||||||||||||||||| ||||||| ||| || ||||||||
Sbjct 1220 AGATTTCAGTTTCGGTTCATCTGAGACAGAGACTAACATCAACAACAACACAGTCATAGA 1279
Query 992 CACAAACATCTCAGTCTTGAATCCAGAAGAAAACGTTTACAGCTTCGGTTTACTATTATT 1051
|||| ||||||||| ||||||||||||||| ||| |||||||||| |||||||| |||||
Sbjct 1280 CACACACATCTCAGCCTTGAATCCAGAAGACAACATTTACAGCTTTGGTTTACTGTTATT 1339
Query 1052 CGAAATGATAAGCGGGAAACTCCCAGAATCGGTTAACAAACCTGACTCGGTAGATAGCGC 1111
||||||||||| |||||||||| |||||| ||||||||||||||||| ||||||||| |
Sbjct 1340 CGAAATGATAACCGGGAAACTCATAGAATCCGTTAACAAACCTGACTCAGTAGATAGCTC 1399
Query 1112 GCTGGTTGATTTCTTAAGAGGAGAGACTCTAGCCAAGATGGTAGATCCAACACTGGAATC 1171
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1400 GCTGGTTGATTTCTTAAGAGGAGAGACTCTAGCCAAAATGGTAGATCCAACACTGGAATC 1459
Query 1172 TTATGATGACAAGATTGAGAATATAGGTGAAGTGATCAAATCATGCCTCAGGACCGACCC 1231
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1460 TTATGATGCCAAGATTGAGAATATAGGTGAAGTGATCAAATCATGCCTTAGGACTGACCC 1519
Query 1232 GAAAGAGAGACCTACAATGCGGGAAGTCACAGGATGGTTACGGGAGATCACGGGAATATC 1291
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 1520 GAAAGAGAGACCTACAATGCAAGAAGTCACAGGATGGTTACGGGAGATCACGGGATTGTC 1579
Query 1292 ACCGAATGATGCTACGCCGAAATTGTCACCTCTTTGGTGGGCAGAGTTGGAGGTTTTGTC 1351
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1580 ACCGAACGATGCTACACCGAAATTGTCACCTCTTTGGTGGGCAGAGTTGGAGGTTTTGTC 1639
Query 1352 CACGGCTTAAGAGAGGCCC-TTCACCAATAA 1381
|||||| |||||||| ||| ||||| |||||
Sbjct 1640 CACGGCGTAAGAGAGACCCCTTCACTAATAA 1670
> AT3G56050.1 | Symbols: | Protein kinase family protein | chr3:20797955-20800943
REVERSE LENGTH=2104
Length=2104
Score = 656 bits (355), Expect = 0.0
Identities = 747/927 (81%), Gaps = 64/927 (7%)
Strand=Plus/Plus
Query 476 GATTGAAGCTGCATGTGAAGATTTTAGTAATGTCATTGGATCTTGCCCCATTGGGAAATT 535
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 843 GATTGAAGCTGCCTGTGAAGATTTTAGTAATGTCATTGGGTCTTGCCCCATTGGTACATT 902
Query 536 GTTCAAAGGAACATTATCAAGTGGAGTGGAGATTGCTGTTGCTTCTTTTGCTACTACCTC 595
||||||||| || |||||||||| |||||||| ||||| |||||| |||||||| | ||
Sbjct 903 GTTCAAAGGGACGCTATCAAGTGGGGTGGAGATAGCTGTGGCTTCTGTTGCTACTGCGTC 962
Query 596 TGCCAAAGACTGGA-AGGACAATACAGAAATTCACTTTAGGAAGAAGATCGAAATGTTAT 654
||||||||| |||| | | |||| |||||| || || || |||||||||||||||||||
Sbjct 963 TGCCAAAGAATGGACA-AATAATATAGAAATGCAGTTCAGAAAGAAGATCGAAATGTTAT 1021
Query 655 CGAAGATCAACCACAAGAATTTTG-CAAACCTTCTTGGGTATTGTGAAGAA-AAGGAACC 712
| ||||| |||||||||||||||| | ||||||||||| || ||||||||| || |||||
Sbjct 1022 CCAAGATAAACCACAAGAATTTTGTC-AACCTTCTTGGTTACTGTGAAGAAGAA-GAACC 1079
Query 713 TTTCGCTAGGATCTTGATCTTTGAGTATGC-TCCAAATGGATCACTCTTTGAGCATTTAC 771
|||| ||||||||||| ||||||| ||||| | |||| ||| || ||||||| |||||||
Sbjct 1080 TTTCACTAGGATCTTGGTCTTTGAATATGCAT-CAAACGGAACAGTCTTTGAACATTTAC 1138
Query 772 ACTTTAAAGAATCAGAACACTTGGATTGGGGAATGCGGTTAAGAATTGCAATGGG-ATTA 830
||| ||||||||||||||||||||| |||| ||||||| ||||||| |||||||| | ||
Sbjct 1139 ACTATAAAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGGGCA-TA 1197
Query 831 GCATATTGCCTTGACCATATGCACCAACTCAATCCACCTATAGCT-CACACCAATC-TCG 888
|| ||||||||||||||||||||| |||||| |||||||||| | |||| ||||| ||
Sbjct 1198 GCTTATTGCCTTGACCATATGCACGGACTCAAGCCACCTATAG-TCCACAGCAATCTTC- 1255
Query 889 TCTCGTCATCTCTTCAGCTCACAGAGGATTATGCTGTCAAAGTAT-CGGATTTC-A---- 942
|||| ||||| |||| ||||||||||| || || |||||| | | |||||||| |
Sbjct 1256 TCTCATCATCAGTTCAACTCACAGAGGACTACGCAGTCAAAAT-TGCGGATTTCAATTTT 1314
Query 943 -G---TTT---CGGTCCATCTGAGACAGAGA-CTAGCATCAACGACACAGTCATAGACAC 994
| ||| || ||||| |||||||| | | |||| ||| | ||| ||||||| ||
Sbjct 1315 GGATATTTAAAAGGCCCATCCGAGACAGAAAGC-AGCACCAATG-CAC--TCATAGATAC 1370
Query 995 AAACATCTCAGTCTTGAATC-C-AGAAGAAAACGTTTACAGCTTCGGTTTACTATTATTC 1052
||||||||||| || | | |||||| || ||| |||||||||| || || || ||
Sbjct 1371 AAACATCTCAG-AAACAA-CACAAGAAGACAATGTTCACAGCTTCGGGTTGCTGTTGTTT 1428
Query 1053 GAAATGATAAGC-GGGAAACTCCCAGAATCGGTT-AACAAACCTGACTCGGTAGATAGCG 1110
||| |||| | | || ||||||||||| || ||| || ||| ||||||| |||||| ||
Sbjct 1429 GAACTGATGA-CAGGAAAACTCCCAGAGTCAGTTCAA-AAAGGTGACTCGATAGATACCG 1486
Query 1111 CG-CTGGTTGAT-TTCTTAAGAGGAGAGAC-TCT-AGCCAAGATGGTAGATCCAAC-ACT 1165
| ||| || | ||||| |||||| |||| | | || ||||||| ||||| || | |
Sbjct 1487 -GATTGGCTG-TCTTCTTGAGAGGAAAGACAT-TAAG-GGAGATGGTGGATCCGACAATT 1542
Query 1166 GGAATCTTATGATGACAAGATTGAGAATATAGGTGAAGTGATCAAAT-CATGCCTCAGGA 1224
| || ||| ||| || |||||||||||||||||||||||||||||| | ||| | || |
Sbjct 1543 GAAAGCTT-TGACGAGAAGATTGAGAATATAGGTGAAGTGATCAAAAGC-TGCATAAG-A 1599
Query 1225 CC-GACCCGAAAGAGAGACCTACAATGCGGGAAGTCACAGG-ATGGTTACGGGAGATCAC 1282
| ||| ||||| ||||||| | |||| |||||||||||| | | ||||| ||||||||
Sbjct 1600 GCAGACGCGAAACAGAGACCGATAATGAAGGAAGTCACAGGGA-GATTACGAGAGATCAC 1658
Query 1283 GGGAATATCACC-GAATGATGCTA-CGCCGAAA-TTGTCACCTCTTTGGTGGGCAGAGTT 1339
||| ||||||| || || ||| | || ||| || ||||| || |||||||||||| |
Sbjct 1659 TGGATTATCACCAGAC-GACACTATC-CCAAAACTT-TCACCACTCTGGTGGGCAGAGCT 1715
Query 1340 GGAGGTTTTGTCCACGGCTT-AAGAGA 1365
||| ||| ||||||| || | ||||||
Sbjct 1716 GGAAGTTCTGTCCACTGCGTGAAGAGA 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5