BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934830
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40280.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 2771 0.0
> AT2G40280.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr2:16825500-16828398
REVERSE LENGTH=2075
Length=2075
Score = 2771 bits (1500), Expect = 0.0
Identities = 1724/1830 (94%), Gaps = 24/1830 (1%)
Strand=Plus/Plus
Query 1 TCTCTAATGATCTTTCTTCTTCAATGGCGATATCAGTACAACACGTCGTCGTTTTACTCC 60
|||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 77 TCTCTAATGATC-TTCGTCTCCAATGGCGATATCAGTACAACACGTCGTCGTTTTACTCC 135
Query 61 TCTCCACTCTCCTCATCGCCATCACCTTCTTCCTCCTCACCTCCGATAACGCCACATTCC 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 136 TCTCCACTCTCCTCATCGCCATCACCTTCTTCCTCTTCACCTCCGATAACGCCAGATTCC 195
Query 121 CTTTCCCTTCTCTCTCC-CCAACCGATTACTACACACCAAACGGTCCAAACCCCAAATC- 178
||||||||||||||||| || ||||||||||||||||| || | ||| |||||
Sbjct 196 CTTTCCCTTCTCTCTCCACC-ACCGATTACTACACACC-AA---T-----CCCAAAATCT 245
Query 179 CCTAAATCCTCACCAAAACGTCGACGTTTCTTCAGATCAAACTCCACAGAAGATGAAGCT 238
|| || |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 CC-AATTCCTCACCGAATCGTCGACGTTTCTTCAGATCAAACTCCACAGAAGATGAAGCT 304
Query 239 TAACACTTCCCAAGAGGT-GGATGAGCTGAAATGGGATCTATGTAAAGGCGCAGAATCTG 297
|||||||||| ||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 305 AAACACTTCCCTCGAGGTGGGA-GAGCTGAAATGGGATCTATGTAAAGGTGCAGAATCTG 363
Query 298 TTGATTACATACCTTGTCTTGATAATTACGCTGCCATTAAGCAGCTCAAATCGAGGAGAC 357
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 364 TTGATTACATACCTTGTCTTGATAATTACGCTGCCATCAAGCAGCTCAAATCAAGGAGAC 423
Query 358 ATATGGAGCATCGAGAACGTCATTGCCCTGAACCAAGTCCTAAATGTCTCGTTACCTTGC 417
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 424 ATATGGAGCATCGAGAACGTCATTGCCCTGAACCAAGTCCTAAATGTCTCCTTCCCTTGC 483
Query 418 CGGATAATTATAAGCCGCCGGTTCCGTGGCCTAAGAGCCGGGATATGATTTGGTATGACA 477
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CTGATAATTATAAGCCGCCGGTTCCGTGGCCTAAGAGCCGGGATATGATTTGGTATGACA 543
Query 478 ATGTTCCCCACCCCAAGCTTGTAGAATACAAGAAAGAACAAAACTGGGTTAAAAAAGAGG 537
||||||| || ||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 544 ATGTTCCTCATCCCAAGCTTGTTGAATACAAGAAGGAACAAAATTGGGTTAAAAAAGAGG 603
Query 538 GTGAATTTCTAGTTTTTCCTGGAGGAGGTACTCAATTCAAATTCGGGGTTACTCATTACG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GTGAATTTCTAGTTTTTCCTGGAGGAGGTACTCAATTCAAATTCGGGGTTACTCATTACG 663
Query 598 TTGAGTTCATCGAAAAGGCTTTACCGAGTATCAAATGGGGGAAAAACATAAGGGTTGTAT 657
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTGAGTTCATCGAAAAGGCGTTACCGAGTATCAAATGGGGGAAAAACATAAGGGTTGTAT 723
Query 658 TAGATGTTGGTTGCGGTGTTGCTAGCTTTGGCGGGTCTTTATTAGATAAAGATGTCATTA 717
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 724 TAGATGTTGGTTGTGGTGTTGCTAGCTTTGGCGGATCTTTATTAGATAAAGATGTCATTA 783
Query 718 CAATGTCGTTTGCCCCTAAAGATGAACATGAAGCTCAGATTCAATTTGCATTAGAACGAG 777
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 784 CAATGTCGTTTGCTCCTAAAGATGAACATGAAGCTCAGATTCAATTTGCGTTAGAACGAG 843
Query 778 GAATACCTGCAACACTTTCTGTAATTGGAACACAACAGCTTACGTTTCCCAGCAATGCAT 837
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 844 GAATACCTGCAACACTTTCTGTTATTGGAACACAACAGCTCACGTTTCCGAGCAATGCAT 903
Query 838 TTGATCTTATCCATTGTGCGCGGTGCAGAGTCCATTGGGATGCTGATGGTGGGAAACCGT 897
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TTGATCTTATACATTGTGCACGGTGCAGAGTCCATTGGGATGCTGATGGTGGGAAACCGT 963
Query 898 TGTTGGAGCTCAATAGGGTACTCAGGCCAGGAGGTTTCTTCATATGGTCTGCGACACCAG 957
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 964 TGTTGGAGCTCAATAGGGTACTTAGGCCAGGAGGTTTCTTCATATGGTCTGCAACACCAG 1023
Query 958 TCTATCGAGATAACGACAGAGATAGCAGAATTTGGAGTGCAATGGTTTCTCTGACTAAAT 1017
||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 1024 TCTATCGAGATAATGACAGAGATAGCAGAATTTGGAATGAAATGGTTTCTCTTACTAAAT 1083
Query 1018 CTATTTGCTGGAAGGTCGTGACAAAGACGGTTGATTCCTCTGGAATCGGACTTGTGATCT 1077
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 CCATTTGCTGGAAGGTCGTGACAAAGACGGTTGATTCCTCTGGAATCGGACTTGTGATCT 1143
Query 1078 ATCAAAAGCCAACTTCAGAATCCTGTTATAATAAACGCAGCACGCAAGACCCACCTCTAT 1137
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || |
Sbjct 1144 ATCAAAAGCCAACATCAGAATCCTGTTATAATAAACGCAGCACACAAGATCCACCACTTT 1203
Query 1138 GCAATAAAAAGGAAGCAAATGCTTCATGGTATGTTCCTCTCGCCAAATGCATTTCCAAAT 1197
| |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| |
Sbjct 1204 GTGATAAAAAGGAAGCAAATGGTTCATGGTATGTTCCTCTCGCTAAATGCCTTTCCAAGT 1263
Query 1198 TACCGAGCGGAAATGTCCAGATTTGGCCTGAACTATGGCCTAAACGGCTTGTGAGTGTTA 1257
|||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1264 TACCTAGTGGAAATGTCCAGAGTTGGCCTGAACTATGGCCTAAACGGCTTGTGAGTGTTA 1323
Query 1258 AACCGCAAAGCATTTCGGTTGAAGCGGAAACATTGAAGAAAGATACAGAAAAATGGTCAG 1317
|||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1324 AACCGCAAAGCATTTCAGTTAAAGCGGAAACATTGAAGAAAGATACAGAGAAATGGTCAG 1383
Query 1318 CAATTGTATCTGATGTTTATCTCGAACATCTACCTGTAAACTGGTCGACTGTGCGGAATG 1377
||| ||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 1384 CAAGTGTTTCTGATGTTTACCTCAAACATCTAGCTGTAAACTGGTCGACTGTGCGGAATG 1443
Query 1378 TGATGGACATGAATGCTGGTTTTGGCGGTTTTGCTGCTGCACTTATAAATCGACCTCTCT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1444 TGATGGACATGAATGCTGGTTTTGGCGGTTTTGCTGCTGCACTTATAAATCTACCACTCT 1503
Query 1438 GGGTGATGAATGTTGTCCCTGTGGATAAACCTGACACTCTCTCAGTTGTTTATGATCGAG 1497
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1504 GGGTGATGAATGTTGTCCCTGTGGATAAACCTGACACTCTCTCCGTCGTTTATGATCGAG 1563
Query 1498 GCTTGATCGGAATTTACCATGATTGGTGTGAGTCCCTCAACACTTACCCTAGAACATACG 1557
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1564 GCTTGATCGGAGTTTACCATGATTGGTGTGAGTCCGTCAACACTTACCCTAGAACATACG 1623
Query 1558 ATTTGCTACATTCCAGTTTCCTCCTGGGTGATACTGATCTCACACAAAGGTGTGAGATTG 1617
|| || ||||||||||||||||||| |||||| || | |||||||||||||||||||
Sbjct 1624 ATCTGTTACATTCCAGTTTCCTCCTAGGTGAT-CT---C--ACACAAAGGTGTGAGATTG 1677
Query 1618 TACAAGTGGTAGCTGAGATAGATAGGATAGTGAGACCAGGCGGATATCTTGTGGTACAAG 1677
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1678 TACAAGTGGTAGCTGAGATAGATCGGATAGTGAGACCAGGTGGATATCTTGTGGTACAAG 1737
Query 1678 ACACCATGGAAACAATAAAGAAGCTTGAATACATACTTGGTTCGCTTCATTGGTCAACCA 1737
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1738 ACAACATGGAAACAATAATGAAGCTTGAATCCATACTTGGTTCGCTTCATTGGTCAACCA 1797
Query 1738 AAATATACCAGGACCGGTTTTTTGTTGGTCAGAAGGGGTTTTGGCGTCCCGCTAAACCGG 1797
|||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 1798 AAATATACGAGGACCGGTTTTTGGTTGGTCGGAAGGGATTTTGGCGTCCCGCTAAACCGG 1857
Query 1798 AACTCTGATAGACAGAAAGA-A-ACATAAA 1825
| ||| ||||||||||| || | |||||||
Sbjct 1858 AGCTCAGATAGACAGAACGAGAGACATAAA 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90310780455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5