BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934834
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40316.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1247 0.0
> AT2G40316.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Autophagy-related protein 27 (InterPro:IPR018939);
Has 138 Blast hits to 138 proteins in 57 species:
Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 62; Plants -
33; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
| chr2:16836210-16839189 FORWARD LENGTH=1477
Length=1477
Score = 1247 bits (675), Expect = 0.0
Identities = 811/876 (93%), Gaps = 11/876 (1%)
Strand=Plus/Plus
Query 2 AAGCTAGGAGGGAA-GAGAAATGTCGGGGAAACTTTGGATTCCGAGATTTCTTCTCATCA 60
|||||||||| || ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 126 AAGCTAGGAGCTAAGGAGAAATGTCGGGGAAACTTTGGATCCCGAGATTTATTCTCATCA 185
Query 61 CTCT-CGTGCTTAGCAGCTTC-CGAGTTAACTCTCAATGTGAATTCAGTTTCACTGGACG 118
|||| | || ||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 186 CTCTAC-TGTTTATTAGC-TCACGAGTTAACTCTCAATGTGAATTCAGTTTCACTGGACG 243
Query 119 CAACAAGGTCTTTGC-TTTCAATTTAGCTTCTTCGATTCGAAATT-TCCCTCACGGTGTC 176
||||||||||||| | |||||| |||| ||||||||||| |||| | |||||||||||
Sbjct 244 CAACAAGGTCTTT-CATTTCAACCTAGCATCTTCGATTCGGAATTAT-CCTCACGGTGTG 301
Query 177 CTCAGCGAAGATGGGTTTTATAGAGTGGAAGCGAACAGTACCGTGTTATGGTTTCAGCTT 236
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 302 CTCAGCGAAGATGGGTTTTATAAAGTGGAAGCGAACAGTTCCGTGTTATGGTTTCAGCTT 361
Query 237 TGTGATGTGCTGATTTTCAATCACGATCCTCCTCGATGTGTTGGTTGTGAAGATTGCGGA 296
||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct 362 TGTGACGTGCTGATTTTCAATCATGATCCCCCTCGATGTGTTGGTTGCGAAGATTGTGGA 421
Query 297 GGTCCATCACACTGTGGAACATCATGTGGTGCACTTGTGTCAGAAAATGTAAGAGGTTAT 356
|||||||| ||||| ||||| |||||| |||||||||||||||||||||||||||| |||
Sbjct 422 GGTCCATCTCACTGCGGAACGTCATGTAGTGCACTTGTGTCAGAAAATGTAAGAGGGTAT 481
Query 357 GATGTATGCACTTCTCTAGGGCATGCCTCAAGCACAAAAGTTGATATTATTGATAAAGAG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GATGTATGCACTTCTCTAGGGCATGCCTCAAGCACAAAAGTTGATATTATTGATAAAGAG 541
Query 417 GATCCTGGCAAAGGTGTCATCGTTAAAATGTCTGGTGGGGATAGGAACCAAAATTGCTCA 476
|||||||||||||| ||||| ||| | ||||| ||| |||||||||||||||||||
Sbjct 542 GATCCTGGCAAAGGCGTCATTGTTCAGATGTCAACTGGAAATAGGAACCAAAATTGCTCG 601
Query 477 CTTTCAGTTTCTGTTATCTGCCAGAAAAATAAAGTTGATGGACCACTCACTCTGGCGAAA 536
||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||
Sbjct 602 CTTTCAGTTTCTGTTATTTGCCAGAAAACTAAAGTTGATGGACCACTCACTTTGGCGAAA 661
Query 537 TCTGGTACATGTCATTATGCTACTCAGCTGCGACATCCCT-CCGGTTGTGCAGCAGCTAT 595
|||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 662 TCTGGTACCTGTCAGTATGCTACTCAGCTGCGACATCC-TGCCGGTTGTGCAGCAGCTAT 720
Query 596 CTCTGGCCATAGCAGTGGATGGGGCTGGTTTAGTACCTTACTAATCATTATCTTGTGCCT 655
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATCCGGCCATAGTAGTGGATGGGGCTGGTTTAGTACCTTACTAATCATTATCTTGTGCCT 780
Query 656 GTTTGGAGCTTATCTGCTGGGTGGTGCAGTATATCGGTATTTCTCCCTTGGAATTCGTGG 715
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTTGGAGCTTATCTGGTGGGTGGTGCAGTATATCGGTATTTCTCCCTTGGAATTCGTGG 840
Query 716 CATAGATGTAATCCCGAACGTGGATTACTGGGCCACTGTACCTCACAGCGTACAGAGCTG 775
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 841 CATAGATGTAATCCCGAATATGGATTACTGGGCCACTGTACCTCACAGTATACAGAGCTG 900
Query 776 TTTTGGCTCACTATTTTCGAGATTCGGGGGGTCTAGTCGTGGTCAACGAACCTCATATTC 835
|||||||||||||||||| |||||||||||||||| ||||||||| | ||||||||||||
Sbjct 901 TTTTGGCTCACTATTTTCAAGATTCGGGGGGTCTATTCGTGGTCAGCAAACCTCATATTC 960
Query 836 TCAGGTCAACTTCTGAGCAGACACAGCATATTCTCT 871
|||||||||||||||||||| | |||||| ||||||
Sbjct 961 TCAGGTCAACTTCTGAGCAGTCTCAGCATCTTCTCT 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42498088362
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5