BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934838
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40340.1 | Symbols: DREB2C, AtERF48 | Integrase-type DNA-bin... 1513 0.0
AT2G40350.1 | Symbols: | Integrase-type DNA-binding superfamil... 616 2e-175
AT5G05410.1 | Symbols: DREB2A, DREB2 | DRE-binding protein 2A |... 158 1e-37
> AT2G40340.1 | Symbols: DREB2C, AtERF48 | Integrase-type DNA-binding
superfamily protein | chr2:16848438-16850487 REVERSE
LENGTH=1383
Length=1383
Score = 1513 bits (819), Expect = 0.0
Identities = 953/1018 (94%), Gaps = 8/1018 (1%)
Strand=Plus/Plus
Query 74 CAGGAAAAGGAAGTCTCGTGGAACACGAGATGTAGCTGAGATTCTAAGGCAATGGAGAGA 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 CAGGAAAAGGAAGTCTCGTGGAACACGAGATGTAGCTGAGATTCTAAGGCAATGGAGAGA 210
Query 134 GTATAATGAGCAGACCGAGGCAGATTCTTGCATCGATGGTGGTGTTCCGAAACCAGTCCG 193
||| |||||||||| |||||||| ||||| ||||||||||||| ||| ||| || ||||
Sbjct 211 GTACAATGAGCAGATTGAGGCAGAATCTTGTATCGATGGTGGTGGTCCAAAATCAATCCG 270
Query 194 AAAGCCTCCTCCAAAAGGTTCGAGGAAGGGTTGTATGAAAGGTAAAGGAGGACCTGAAAA 253
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 271 AAAGCCTCCTCCAAAAGGTTCGAGGAAGGGTTGTATGAAAGGTAAAGGTGGACCTGAAAA 330
Query 254 TGGGATTTGTGACTATAGAGGAGTTAGACAGAGGACATGGGGTAAATGGGTCGCTGAGAT 313
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 331 CGGGATTTGTGACTATAGAGGAGTTAGACAGAGGAGATGGGGTAAATGGGTTGCTGAGAT 390
Query 314 CCGTGAGCCAGGCCGAGGTGCTAGGTTATGGCTCGGTACTTTCTCTAGTTCATATGAAGC 373
||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 391 CCGTGAGCCAGACGGAGGTGCTAGGTTGTGGCTCGGTACTTTCTCCAGTTCATATGAAGC 450
Query 374 TGCATTGGCTTATGACGAGGCTGCCAAAGCTATATATGGTCAGTCTGCCAGACTCAATCT 433
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 451 TGCATTGGCTTATGACGAGGCGGCCAAAGCTATATATGGTCAGTCTGCCAGACTCAATCT 510
Query 434 TCCCGAGATCACGAATCGCTCTTCTTCGA---CTG-C-C-GCCACTGTGTCTGGCTCGGT 487
|||||||||||| |||||||||||||||| ||| | | ||||||||||| ||||||||
Sbjct 511 TCCCGAGATCACAAATCGCTCTTCTTCGACTGCTGCCACTGCCACTGTGTCAGGCTCGGT 570
Query 488 TACTGCATTTTCAGATGAATCTGAAGTCTGTGCACGTGAGGATACAAACGTAAGATCTGG 547
|||||||||||| |||||||||||||| |||||||||||||||||||| | ||| || ||
Sbjct 571 TACTGCATTTTCTGATGAATCTGAAGTTTGTGCACGTGAGGATACAAATGCAAGTTCAGG 630
Query 548 TTTTGGTCAGGTGAAACTAGAGGATTGTAACGATGAATATGTTCTCGTAGATAGTTCTCA 607
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 631 TTTTGGTCAGGTGAAACTAGAGGATTGTAGCGATGAATATGTTCTCTTAGATAGTTCTCA 690
Query 608 GTGTATTAAAGAGGAGCTGAAAGTAAAAGAGGAAGTGATGGAAGAACATAACTCGGCTGT 667
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 691 GTGTATTAAAGAGGAGCTGAAAGGAAAAGAGGAAGTGAGGGAAGAACATAACTTGGCTGT 750
Query 668 TGGTTTTGGAATTGGACAGGACCCGAAAAGGGAGATTTTGGATGCTTGGTTAATGGGAAA 727
|||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||
Sbjct 751 TGGTTTTGGAATTGGACAGGACTCGAAAAGGGAGACTTTGGATGCTTGGTTGATGGGAAA 810
Query 728 TGGCAATGAACAAGAACCATTGGAGTTTGGTGTGGACGAAACGTTTGATATTAATGAGCT 787
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 811 TGGCAATGAACAAGAACCATTGGAGTTTGGTGTGGATGAAACGTTTGATATTAATGAGCT 870
Query 788 TTTGGGTATATTAGACGACAACAATGTGTCTGGCCAAGAGACAATGCAGAATCAAGTTGA 847
|||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 871 ATTGGGTATATTAAACGACAACAATGTGTCTGGTCAAGAGACAATGCAGTATCAAGTGGA 930
Query 848 TAGACTGCCAAACTTCAGTTACCAAACGCAGTTT-CAAGATGCTAACTTGTTCGGGAGCC 906
||||| ||||| ||||||||||||||||||||| ||| || |||||||| |||||||||
Sbjct 931 TAGACACCCAAATTTCAGTTACCAAACGCAGTTTCCAA-ATTCTAACTTGCTCGGGAGCC 989
Query 907 TCGACCCTATGGAGATTGCTCATCCTGGAGTTGATTATGGATATCCTTATGTGCAGCCGA 966
|| ||||||||||||||||||| || |||||||||||||||| ||||||||||||||| |
Sbjct 990 TCAACCCTATGGAGATTGCTCAACCAGGAGTTGATTATGGATGTCCTTATGTGCAGCCCA 1049
Query 967 GTGAAATGGAGAACAATGGTATTGATTTAGACCATCGCAGGTTCAATGATCTTGACATAC 1026
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 GTGATATGGAGAACTATGGTATTGATTTAGACCATCGCAGGTTCAATGATCTTGACATAC 1109
Query 1027 AGGACTTGGATTTTGGAGGGGAAAAAGATGTTCATGGCTCTACATAAGATCTCAGATT 1084
||||||||||||||||||| || |||||||||||||| |||||||||||| ||| |||
Sbjct 1110 AGGACTTGGATTTTGGAGGAGACAAAGATGTTCATGGATCTACATAAGATTTCAAATT 1167
> AT2G40350.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr2:16851595-16852068 REVERSE LENGTH=474
Length=474
Score = 616 bits (333), Expect = 2e-175
Identities = 447/497 (90%), Gaps = 27/497 (5%)
Strand=Plus/Plus
Query 72 CCCAGGAAAAGGAAGTCTCGTGGAACACGAGATGTAGCTGAGATTCTAAGGCAATGGAGA 131
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4 CCCAGGAAACGGAAGTCTCGTGGAACACGAGATGTAGCTGAGATTCTAAGGAAATGGAGA 63
Query 132 GAGTATAATGAGCAGACCGAGGCAGATTCTTGCATCGATGGTGGT-GTTCCGAAACCAGT 190
||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||| |
Sbjct 64 GAGTACAATGAGCAGACCGAGGCAGATTCTTGCATCGATGGTGGTGGTT-CAAAACCAAT 122
Query 191 CCGAAAGCCTCCTCCAAAAGGTTCGAGGAAGGGTTGTATGAAAGGTAAAGGAGGACCTGA 250
||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 123 CCGAAAGGCTCCTCCAAAACGTTCGAGGAAGGGTTGTATGAAAGGTAAAGGTGGACCTGA 182
Query 251 AAATGGGATTTGTGACTATAGAGGAGTTAGACAGAGGACATGGGGTAAATGGGTCGCTGA 310
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 183 AAATGGGATTTGTGACTATACAGGAGTTAGACAGAGGACATGGGGTAAATGGGTTGCTGA 242
Query 311 GATCCGTGAGCCAGGCCGAGGTGCTAGGTTATGGCTCGGTACTTTCTCTAGTTCATATGA 370
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 243 GATCCGTGAGCCAGGCCGAGGTGCTAAGTTATGGCTCGGTACTTTCTCTAGTTCATATGA 302
Query 371 AGCTGCATTGGCTTATGACGAGGCTGCCAAAGCTATATATGGTCAGTCTGCCAGACTCAA 430
|||||||||||||||||| |||||| |||||||||| || |||||||||||| |||||||
Sbjct 303 AGCTGCATTGGCTTATGATGAGGCTTCCAAAGCTATTTACGGTCAGTCTGCCCGACTCAA 362
Query 431 TCTTCCCGAGATCACGAATCGCTCTTCTTCGACTGCCGCCACTGTGTCTGGCTCGGTTAC 490
|||||| | | | ||| | | | |||||||| |||||||||||
Sbjct 363 TCTTCC--A---C-----T-GCT-------G-C--C----ACTGTGTCAGGCTCGGTTAC 397
Query 491 TGCATTTTCAGATGAATCTGAAGTCTGTGCACGTGAGGATACAAACGTAAGATCTGGTTT 550
||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 398 TGCATTTTCTGATGAATCTGAAGTTTGTGCACGTGAGGATACAAATGCAAGATCTGGTTT 457
Query 551 TGGTCAGGTGAAACTAG 567
||||||||| | |||||
Sbjct 458 TGGTCAGGTCAGACTAG 474
> AT5G05410.1 | Symbols: DREB2A, DREB2 | DRE-binding protein 2A
| chr5:1602205-1603911 FORWARD LENGTH=1450
Length=1450
Score = 158 bits (85), Expect = 1e-37
Identities = 176/217 (81%), Gaps = 18/217 (8%)
Strand=Plus/Plus
Query 207 AAAGGTTCGAGGAAGGGTTGTATGAAAGGTAAAGGAGGACCTGAAAATGG--GATTTGTG 264
||||| |||| |||||||||||||||||||||||||||||| || ||| | ||| ||
Sbjct 363 AAAGGGTCGAAGAAGGGTTGTATGAAAGGTAAAGGAGGACCAGAGAATAGCCGAT--GT- 419
Query 265 ACTAT-AGAGGAGTTAGACAGAGGACATGGGGTAAATGGGTCGCTGAGATCCGTGAGCC- 322
| | | ||||||||||| || |||| |||||||||||||| ||||||||| | |||||
Sbjct 420 AGTTTCAGAGGAGTTAGGCAAAGGATTTGGGGTAAATGGGTTGCTGAGATCAGAGAGCCT 479
Query 323 AGGCCGAGGT-GCTAGG-TTATGGCTCGGTACTTTCTCTAGT--TCATATGAAGCTGCAT 378
| | ||||| || ||| || ||||| ||||||||| ||| | ||| | |||||||| |
Sbjct 480 AATC-GAGGTAGC-AGGCTT-TGGCTTGGTACTTTCCCTACTGCTCA-A-GAAGCTGCTT 534
Query 379 -TGGCTTATGACGAGGCTGCCAAAGCTATATATGGTC 414
|| ||||||| |||||||| |||||||| |||||||
Sbjct 535 CTG-CTTATGATGAGGCTGCTAAAGCTATGTATGGTC 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5