BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934840
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40370.1 | Symbols: LAC5 | laccase 5 | chr2:16858166-1686060... 2665 0.0
> AT2G40370.1 | Symbols: LAC5 | laccase 5 | chr2:16858166-16860606
REVERSE LENGTH=1782
Length=1782
Score = 2665 bits (1443), Expect = 0.0
Identities = 1675/1786 (94%), Gaps = 20/1786 (1%)
Strand=Plus/Plus
Query 9 GAAATCGCATTGATGGA-GATCGTCAAGAGCCT-C-AT-CTTCATCTCTTT-GGCTGTCG 63
|||||| ||| ||||| | || ||||||||| | | |||||||||||| | | | |
Sbjct 2 GAAATCACATCAATGGATG-TCACCAAGAGCCTCCTCTGCTTCATCTCTTTCGTC-GCCT 59
Query 64 TTCTTCTCTTCGCTTCCATAGCAGAAGCCAACATTAAAGCACACCACCACGAGTTCATTA 123
||||||||||| | ||| | |||||||||||| ||||||||||||||||||||||| |
Sbjct 60 TTCTTCTCTTCTCCTCCGTGGCAGAAGCCAAC---AAAGCACACCACCACGAGTTCATAA 116
Query 124 TACAAGCGACGAAA-GTGAAGAGACTATGTGAAACACACAACAGCATTACGGTCAACGGA 182
|||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 117 TACAAGCGAC-AAAGGTGAAGAGACTATGTGAAACACACAACAGTATTACAGTCAATGGA 175
Query 183 ATGTTTCCCGGTCCAATGCTTGTAGTCAACAACGGTGATACTCTCGTCGTCAAAGTTATT 242
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 176 ATGTTTCCCGGTCCAATGCTTGTAGTCAACAACGGTGACACTCTCGTCGTCAAAGTTATC 235
Query 243 AACCGGGCTCGGTACAACATAACAATCCACTGGCACGGTGTGAGGCAAATGCGAACCGGT 302
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 236 AACCGGGCCCGGTACAACATCACAATCCACTGGCACGGTGTGAGGCAGATGCGAACCGGT 295
Query 303 TGGGCAGATGGACCGGAATTTGTGACCCAATGTCCAATCAGACCGGGATCAAGCTACACG 362
||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 296 TGGGCTGACGGACCGGAATTTGTGACCCAATGCCCAATCAGACCGGGATCAAGTTACACG 355
Query 363 TACCGGTTTACTATCCAAGGACAAGAAGGTACACTTTGGTGGCATGCTCATAGTTCGTGG 422
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 356 TACCGGTTTACAATTCAAGGACAGGAAGGTACACTTTGGTGGCATGCTCATAGTTCGTGG 415
Query 423 CTTAGAGCCACTGTCTACGGTTCGCTTCTTGTCCTTCCTCCGGCTGGCTCGTCTTACCCG 482
|||||||| |||||||||||||| ||||| ||| ||||||| ||||| |||||||||||
Sbjct 416 CTTAGAGCAACTGTCTACGGTTCACTTCTCGTCTTTCCTCCTGCTGGTTCGTCTTACCCA 475
Query 483 TTCACAAATCCCCACCGCAACGTCCCTCTCCTTCTTGGTGAATGGTGGGACGCAAATCCG 542
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTCACAAAACCCCACCGCAACGTCCCTCTCCTTCTTGGTGAATGGTGGGACGCAAATCCG 535
Query 543 GTTGATGTGTTGAGAGAATCTATACGAACCGGAGGAGCTCCTAATAACTCCGACGCTTAC 602
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 536 GTTGATGTGTTGAGAGAATCTATACGAACCGGAGGAGCTCCGAATAACTCAGACGCTTAC 595
Query 603 ACCATCAATGGTCAACCAGGCGATCTCTATAAATGCTCTTCTCAAGATACGACAATAGTA 662
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 596 ACCATCAATGGTCAACCTGGCGATCTCTATAAATGCTCTTCTCAAGATACGACAGTAGTA 655
Query 663 CCAATAAACGTTGGTGAGACTATACTACTACGGGTAATAAACTCAGCATTGAACCAACCG 722
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 656 CCAATAAATGTTGGTGAGACTATACTACTACGAGTAATAAACTCAGCATTAAACCAACCG 715
Query 723 TTATTCTTCACGGTTGCTAACCACAAGCTCACGGTGGTGGGAGCTGACGCGTCTTACGTA 782
|||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||| ||
Sbjct 716 TTATTCTTCACGGTGGCTAATCACAAACTCACGGTGGTCGGAGCTGACGCGTCATACCTA 775
Query 783 AAACCCTTCACCACTAACGTGATTGTTCTTGGCCCGGGCCAAACCACTGATGTCCTCATA 842
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 776 AAACCCTTCACCACTAACGTGATAGTTCTTGGCCCGGGACAAACCACAGATGTCCTCATA 835
Query 843 ACCGGTGACCAACCACCAAACCGTTACTACATGGCCGCAAGAGCTTACCAAAGCGCCCAA 902
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 836 ACCGGTGACCAACCACCAAATCGCTACTACATGGCCGCAAGAGCTTACCAAAGCGCCCAA 895
Query 903 AACGCACCATTTGGAAACACAACTACAACCGCAATCCTTCAATACAAATCCGCCCCTTGT 962
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 896 AACGCACCGTTTGGAAACACAACCACAACAGCAATCCTTCAATACAAATCCGCCCCTTGT 955
Query 963 TGCGGTGTAGGCGGCGGAAGTGGAACCAAGAAGGGTATTTCCGTCAAACCAATCATGCCT 1022
||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||
Sbjct 956 TGCGGTGTAGGCGGCGGAAGTGGAACCAAGAAGGGTAATTCCTTCAAACCGATCATGCCT 1015
Query 1023 ATCCTCCCTGCCTACAACGACACCAACACCGTCACACGTTTCAGCCAAAGCTTCCGGTCA 1082
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATCCTCCCTGCCTACAACGACACAAACACCGTCACACGTTTCAGCCAAAGCTTCCGGTCA 1075
Query 1083 CTAAGAAGAGCTGAGGTTCCGACAGAAATCGACGAGAATCTGTTTGTAAC-AGTCGGACT 1141
|| ||| |||||||||||||||||||||||||||||||||| || ||||| | |||||||
Sbjct 1076 CTTAGACGAGCTGAGGTTCCGACAGAAATCGACGAGAATCTCTTCGTAACCA-TCGGACT 1134
Query 1142 CGGTCTCAACAACTGTCCTAAGAACTTTAGATCAAGAAGATGTCAAGGTCCTAACGGCAC 1201
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1135 CGGTCTCAACAACTGTCCTAAGAACTTCAGATCAAGAAGATGTCAAGGTCCTAACGGCAC 1194
Query 1202 ACGTTTCACTGCATCGATGAACAACATTTCATTTGCTCTCCCAAGTAACTACTCACTCCT 1261
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1195 ACGTTTCACTGCATCGATGAACAACGTTTCATTTGCTCTTCCAAGTAACTACTCACTCCT 1254
Query 1262 TCAAGCTCACCACCATGGGATCCCCGGAGTCTTCACAACCGATTTTCCTGCCAAACCTCC 1321
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1255 TCAAGCTCACCACCATGGGATCCCCGGAGTCTTCACAACCGATTTTCCGGCGAAGCCTCC 1314
Query 1322 GGTGAAATTTGATTACACAGGTAACAACATAAGCCGATCTCTCTACCAACCTGATAGAGG 1381
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GGTGAAATTTGATTACACTGGTAACAACATAAGCCGATCTCTCTACCAACCTGATAGAGG 1374
Query 1382 GACTAAGCTATACAAACTCAAGTATGGATCAAGGGTTCAGATTGTTCTTCAGGACACTGG 1441
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1375 GACTAAGCTATACAAACTCAAGTATGGATCAAGGGTTCAGATTGTTCTTCAAGACACAGG 1434
Query 1442 TATAGTAACTCCTGAAAATCATCCAATTCATCTACACGGCTACGATTTCTACATTATCGC 1501
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1435 TATAGTAACTCCCGAAAACCATCCCATTCATCTACACGGCTACGATTTCTACATTATCGC 1494
Query 1502 CGAAGGTTTCGGTAACTTCAATCCCAAGAAAGATACCGCGAAATTCAATCTTGAAGACCC 1561
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CGAGGGTTTCGGTAACTTCAATCCCAAGAAAGATACCGCGAAATTCAATCTTGAAGACCC 1554
Query 1562 GCCTCTCAGAAATACTGTTGGTGTACCTGTTAATGGTTGGGCCGTCATCAGATTCGTCGC 1621
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1555 GCCTCTCAGAAATACTGTCGGTGTACCTGTTAATGGTTGGGCCGTCATCAGATTCATCGC 1614
Query 1622 AGACAACCCTGGGGTTTGGATAATGCACTGTCATCTAGATGCACACATATCTTGGGGGCT 1681
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1615 AGACAACCCTGGGGTCTGGATAATGCATTGTCATCTAGATGCACACATATCGTGGGGACT 1674
Query 1682 AGCCATGGCTTTCTTGGTTGAGAATGGAAATGGAGTTTTGCAGACAATGGAGCAGCCTCC 1741
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1675 AGCCATGGCTTTTTTGGTTGAGAATGGAAATGGAGTTTTGCAGACAATAGAACAGCCTCC 1734
Query 1742 TGC-TGATTTACCCGTATGTTATTAGGAGTTCAAGATCCTTTGTAA 1786
| | |||||| ||||| ||||| ||||||||||| | |||||||
Sbjct 1735 T-CATGATTTGCCCGTTTGTTA---GGAGTTCAAGAAC-TTTGTAA 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88352959200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5