BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934847
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40430.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1050 0.0
> AT2G40430.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
P60-like (InterPro:IPR011687), Tumour suppressor protein
Gltscr2 (InterPro:IPR011211); Has 706 Blast hits to 639
proteins in 197 species: Archae - 0; Bacteria - 32; Metazoa
- 228; Fungi - 147; Plants - 47; Viruses - 0; Other Eukaryotes
- 252 (source: NCBI BLink). | chr2:16879216-16882427 REVERSE
LENGTH=1723
Length=1723
Score = 1050 bits (568), Expect = 0.0
Identities = 639/674 (95%), Gaps = 2/674 (0%)
Strand=Plus/Plus
Query 10 agagaacgagaaaaaatggggaagaagtcgaaaacttcaaggaaagggaaaaaagCATGG 69
||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 48 AGATAACGAGAAAAAATGGGGAAGAGGTCGAAAACATCAAGGAAAGGGAAAAAAGCATGG 107
Query 70 AGGGCTAACATAAGCACCGAGGACATTGAAGATTTCTTCGAGAAAACCACCAAAGATGCT 129
||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 108 AGGGCTAACATTAGCTCCGAGGACATTGAAGATTTCTTCGAGAAAACTACCAGAGATGCT 167
Query 130 CTCTCCGGCGGTAATCTCTCCGGTGCTCCCAGCGAGGACCTGTTCCACGTCGATAAATCC 189
|||||||| || |||||||||| |||||||||||| ||| ||||||||||||||||||||
Sbjct 168 CTCTCCGGTGGCAATCTCTCCGCTGCTCCCAGCGAAGACTTGTTCCACGTCGATAAATCC 227
Query 190 CATGACCTTCCGGTGAAGCGAAAGATTGAGAAACATAGAGAGAGAGTGCTCCGTGTTGAC 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 CATGACCTTCCGGTGAAGCGAAAGATTGAGAAACATAGAGAGAGAGTGCTCCGTGTTGAC 287
Query 250 AGTATCTTAAAGAAGAATCCATTTGTCCAGTTAGTGCCATCTTCAAAGCCTAAGTTGAAG 309
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 288 AGTATCTTAAAGAAGAATCCATTTGTCCAGTTAGTGCCATCTTCAAAGCCAAAGTTGAAG 347
Query 310 AAGAGTAAGAAGACAATCGTTATAGAAGACAAAACACCTAAACAAGTTCAAAAGAA-TGT 368
|| |||||||||||||||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 348 AAAAGTAAGAAGACAATCGTTATAGAAGACAAAGCACCTAAACAAGTTCAAAA-AAGTGT 406
Query 369 TGGTGACGACTCTGTAATGGTGGACTTGTGGGGTGATAATAGTAAAGGAGAAGATGAGAG 428
||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct 407 TGGTGACGATTCTGTAATGGCCGACTTGTGGGGTGATGATAGTAAAGGAGAACATGAGAG 466
Query 429 CAATCCTAGAAAGATTTTCAAAAAGCCATCGATTATTCCAGCAGTGGAAATTGAACATCC 488
|||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||
Sbjct 467 CAATCCTAGAAAGATTTTCAAAAATCCTTCGATTATTTCAGCAGTAGAAATTGAACATCC 526
Query 489 AGGATGCTCATACAACCCTACAACTGAAAGTCACCAGGATATGTTGGCTGAAGCTGTTGC 548
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 527 AGGATGCTCATACAACCCTACAACTGAGAGTCACCAGGATATGTTGGCTGAAGCCGTCGC 586
Query 549 TCAAGAAATGCAGAAAGTTTACAAAACTGAATTAGGGCCTGCGCCTGTTCCTTTGACTAT 608
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 587 TCAAGAAATGCAGAAAGTTTACAAAACTGAGTTAGGGCCTGCACCTGTTCCTTTGACTAT 646
Query 609 TGAAGGGGATTCACTCAGTGAAGATGAGAGGTACTTTCTTGATGTGGACAATGTTGGTGA 668
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 647 TGAAGGGGATACACTCAGTGAAGATGAGAGGTACTTTCTTGATGTGGACAATTTTAGTGA 706
Query 669 AGGCGAAGATGATG 682
|||||||||| |||
Sbjct 707 AGGCGAAGATAATG 720
Score = 1013 bits (548), Expect = 0.0
Identities = 608/636 (96%), Gaps = 8/636 (1%)
Strand=Plus/Plus
Query 685 TTAAAGCAGAACCCATTTGTCCAGTTAGTGCCATCTTCAAAGCCAGACTTGAAGACAATC 744
|||||| |||||||||||||||||||| |||||||||||| || ||||||||| ||
Sbjct 759 TTAAAGGAGAACCCATTTGTCCAGTTAAAGCCATCTTCAAATACAAACTTGAAGA-AA-- 815
Query 745 GTTATAGAAGACAAAACTCCTAGACAAGCTCAAAAAAGTGTTGGTGACGATTCTGTAATG 804
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 ---ATAGAAGACAAAACACCTAGACAAGCTCAAAAAAGTGTTGGTGACGATTCTGTAATG 872
Query 805 GTGGACTTGTTGGGTGATGATAGTAAAGAAGACCTGAGGTACTTTCTTGAAGTGGGCAAT 864
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 873 GTGGACTTGTTGGGTGATGATATTAAAGAAGACCTGAAGTACTTTCTTGAAGTGGGCAAT 932
Query 865 GTTGGTGAAGGTGAAGATAATGAAGATGTTGAGAATGAAGTGTCAGAGGCTGGGAACATA 924
||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |
Sbjct 933 GTTGGTGAAGGTGAAGATAATAAAGATGTTAAGATTGAAGTGTCAGAGGCTGGGAACA-A 991
Query 925 T-TCGCAAGGAAAACAAAGAGGGTTACCCGTGTGGAATTAAATAAGCGATGTAGGCAAAA 983
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TGTCTCAAGGAAAACAAAGAGGGTTACCCGTGTGGAATTAAATAAGCGATGTAGGCAAAA 1051
Query 984 GGCACTGCGaaaaaaaGAGACAAAGGAAAAGGCTAAAGAGAAGATATTAAACGAAATTGA 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 GGCACTGCGAAAAAAAGAGACAAAGGAAAAGGCTAAAGAGAAGATATTAAACGAAATTGA 1111
Query 1044 CAGCTTGCCAAATATCTTAGAAGAAATAGCCAGAGAAGATGAGGATAAACAGAATAAACA 1103
||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1112 CAGCTTGCCCAACATCTTAGAAGAAATAGCCAAAGAAGATGAGGATAAACAGAATAAACA 1171
Query 1104 TTTACGACGGGTCATTGCCAAGGAGGAAGTGCTGAAGATACGTCCTCCTCGGTTGGGAAA 1163
||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1172 TTTACGAAGGGTCATCGCCAAGCAGGAAGTGCTGAAGATACGTCCTCCTCGGTTGGGAAA 1231
Query 1164 GTACAAATTTGAGGCTCCTCCAGTTCAAGTCCTCTTGACAGAAGAGATGACTGGGTCACT 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 GTACAAATTTGAGGCTCCTCCAGTTCAAGTCCTCTTGACAGAAGAGATGACTGGGTCACT 1291
Query 1224 TCGTAAGCTGAAGGCATGTTGCACTCTTGCAAGAGATCGATTCAAGAGCCTCGAGAAGCG 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 TCGTAAGCTGAAGGCATGTTGCACTCTTGCAAGAGATCGATTCAAGAGCCTCGAGAAGCG 1351
Query 1284 AGGAATACTTGTTCCCTCAAAACAAATTAGAAGGTT 1319
|||||||||||||||||||||||| |||||||||||
Sbjct 1352 AGGAATACTTGTTCCCTCAAAACAGATTAGAAGGTT 1387
Score = 163 bits (88), Expect = 4e-39
Identities = 147/173 (85%), Gaps = 13/173 (8%)
Strand=Plus/Plus
Query 683 TCTTAAAGCAGAACCCATTTGTCCAGTTAGTGCCATCTTCAAAGCC--------AG---A 731
|||||||| |||| |||||||||||||||||||||||||||||||| || |
Sbjct 292 TCTTAAAGAAGAATCCATTTGTCCAGTTAGTGCCATCTTCAAAGCCAAAGTTGAAGAAAA 351
Query 732 CT-TGAAGACAATCGTTATAGAAGACAAAACTCCTAGACAAGCTCAAAAAAGTGTTGGTG 790
| ||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||
Sbjct 352 GTAAGAAGACAATCGTTATAGAAGACAAAGCACCTAAACAAGTTCAAAAAAGTGTTGGTG 411
Query 791 ACGATTCTGTAATGGTGGACTTGTTGGGTGATGATAGTAAAGAAGACC-TGAG 842
||||||||||||||| ||||||| ||||||||||||||||| ||| | ||||
Sbjct 412 ACGATTCTGTAATGGCCGACTTGTGGGGTGATGATAGTAAAGGAGAACATGAG 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73242595155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5