BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934849
Length=586
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40440.1 | Symbols: | BTB/POZ domain-containing protein | c... 505 2e-142
AT2G40450.1 | Symbols: | BTB/POZ domain-containing protein | c... 335 3e-91
AT3G29740.1 | Symbols: | BTB/POZ domain-containing protein | c... 259 2e-68
> AT2G40440.1 | Symbols: | BTB/POZ domain-containing protein |
chr2:16889212-16891292 REVERSE LENGTH=585
Length=585
Score = 505 bits (273), Expect = 2e-142
Identities = 297/309 (96%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 24 ATGGCAACAGAAACCAACAAAGAGCTTTTCGTGGGTGGATTTGCAAAGATTTTGAAAGAA 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACAGAAACCAACAAAGAGCTTTTCGTGGGTGGATTTGCAAAGATTTTGAAAGAA 60
Query 84 CAACGTCAAGTCGATGTACGTCTAAAGGCAGGGGACAGTGGTGAGGGGGGTGCTTCTATT 143
|||||||||||||||||||| || |||||||||||||||||||| | ||||||||||| |
Sbjct 61 CAACGTCAAGTCGATGTACGGCTTAAGGCAGGGGACAGTGGTGATGAGGGTGCTTCTACT 120
Query 144 TCTGCCCATAAGCTTGTTCTGTCTGCAAGATCAGAGGTGTTTAAGAAGATGTTGGAATCA 203
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TCTGCCCATAAGCTTGTTCTGTCTGCAAGATCAGAGGTGTTTAAGAAGATGTTGGAGTCA 180
Query 204 GACGAGATCAAGACTTCGGCTCAGCTAGAGACAATCACTCTCTGTGAGATGAAACACGAA 263
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GACGAGATCAAGGCTTCGGCTCAACTAGAGACAATCACTCTCTGTGAGATGAAACACGAA 240
Query 264 GAATTAGAGGCTTTCCTTGAATTCTTATACAGCGACGGCTCTATGCTTTCAGAAAAAGAG 323
||||||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 241 GAATTAGAGGCTTTCATTGAATTCATATACAGCGACGGCTCTATGCTTTCTGCAAAAGAG 300
Query 324 AAGCAACAC 332
|||||||||
Sbjct 301 AAGCAACAC 309
> AT2G40450.1 | Symbols: | BTB/POZ domain-containing protein |
chr2:16892024-16892790 REVERSE LENGTH=630
Length=630
Score = 335 bits (181), Expect = 3e-91
Identities = 401/503 (80%), Gaps = 31/503 (6%)
Strand=Plus/Plus
Query 24 ATGGCAACAGAAACCAACAAAGA-GCTTTTCGTGGGTGGATTTGCAA-AGA-TTTTGAAA 80
||||| ||| ||| ||||||||| || |||| | ||||||||| || | | | |||||
Sbjct 1 ATGGCTACACAAAGCAACAAAGAGGC-TTTCTTAGGTGGATTT--AAGAAACTCTTGAAT 57
Query 81 GAACAACGTCAAGTCGATGTACGTCTAAAGGCAGGGGACAGTGGTGAGGGGGGTGCTTCT 140
|||||| | |||| |||||||||||| |||||||| ||||||| ||| | | | |||
Sbjct 58 GAACAATGGCAAGCCGATGTACGTCTCAAGGCAGGAGACAGTGATGA---GACTACATCT 114
Query 141 A-TTTCTGCCCATAAGCTTGTTC-T-GTCTGCAAGATCAGAGGTGTTTAAGAAGATGTTG 197
| |||| ||||| ||||||| || | || |||||||||||||||||||||||||| |||
Sbjct 115 ATTTTC-GCCCACAAGCTTG-TCTTGGT-GGCAAGATCAGAGGTGTTTAAGAAGATATTG 171
Query 198 GAATCAGACGAGATCAAGACTTCGGCT---CAGCTAGAGACAATCACTCTCT-GTGAGAT 253
|||||||||||| ||||| |||| || ||| | |||||| |||| |||| | |||||
Sbjct 172 GAATCAGACGAGTTCAAGGCTTCATCTAAACAGATGGAGACAGTCACCCTCTCG-GAGAT 230
Query 254 GAAACACGAAGAATTAGAGGCTTTCCTTGAATTC-T-TATACAG-CGACGGCTCTATGCT 310
||||||||||||||| |||||||| | || ||| | |||| | || ||||| || |
Sbjct 231 GAAACACGAAGAATTGGAGGCTTTTGTGGAGTTCATCTATAGGGTTGATGGCTCCAT-TT 289
Query 311 -TTCAGAAAAAGAGAAGCAACACGTTAGGTCACTCTATCTTGCGGCTGACAAATATG-GC 368
||| | | ||| |||| | | | ||||||| || ||| || |||||||||| |
Sbjct 290 GTTCTGCTAGTCTCAAGAAACATGCTCGTTCACTCTTTCATGCAGCCGACAAATATGAG- 348
Query 369 ATTCCGCATCTACGGGATCTATGCAGAAGCGAGCTTATATCATATCTT-AACTCTTCAAA 427
|||||||||||| | || |||||||||| |||||||||||||| | || || || || ||
Sbjct 349 ATTCCGCATCTAAGAGACCTATGCAGAAACGAGCTTATATCATCT-TTGAATTCGTCGAA 407
Query 428 TGCTCTTGA-CATCCTTGAGCTCGCCCAAATCCCTTTTGACGATGCCCTCCATGATTCCG 486
||||||| | ||||||||||||||||||||||||||||||| | |||||| ||||| |||
Sbjct 408 TGCTCTT-AGCATCCTTGAGCTCGCCCAAATCCCTTTTGACAAAGCCCTCAATGATCCCG 466
Query 487 CCTTCAATAATATCATAACCAAT 509
|||||| || |||||||||||||
Sbjct 467 CCTTCACTACTATCATAACCAAT 489
> AT3G29740.1 | Symbols: | BTB/POZ domain-containing protein |
chr3:11578468-11578847 FORWARD LENGTH=264
Length=264
Score = 259 bits (140), Expect = 2e-68
Identities = 219/257 (85%), Gaps = 6/257 (2%)
Strand=Plus/Plus
Query 24 ATGGCAACAGAAACCAACAAAGAGCTTTTCGTGGGTGGATTTGCAAAGATTTTGAAAGAA 83
|||||| || ||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1 ATGGCATCACAAACCAACAAAGAGCTTTTCGTGGGTGGACTTGCAAGGATTTTGAAAGAA 60
Query 84 CAACGTCAAGTCGATGTACGTCTAAAGGCAGGGGACAGTGGTGAGGGGGGTGCT-TCTAT 142
|| || ||||||||||| || || |||||||||||||| | | || ||||| | |||||
Sbjct 61 CAGCGACAAGTCGATGTCCGGCTGAAGGCAGGGGACAGCGATCAGAAGGGTG-TATCTAT 119
Query 143 TTCTGCCCATAAGCTTGTTCTGTCTGCAAGATCAGAGGTGTTTAAGAAGATGTTGGAATC 202
||||| |||||||||||||||||||||||||| ||||||||||||| ||| |||||| |
Sbjct 120 ATCTGCTCATAAGCTTGTTCTGTCTGCAAGATCTGAGGTGTTTAAGATGATATTGGAAAC 179
Query 203 AGACGAGATCAAGACTTCGGCT-CAGCTAGAGACAATCACTCTCTGTGAGATGAAACACG 261
||| ||||||||| || | || | |||||| ||||||||||||| ||| | ||||||
Sbjct 180 AGAAGAGATCAAGGCTACAACTAC-GCTAGACACAATCACTCTCTCAGAGCTAAAACAC- 237
Query 262 A-AGAATTAGAGGCTTT 277
| ||| |||| ||||||
Sbjct 238 ACAGAGTTAGTGGCTTT 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28181356467
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5