BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934853
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40475.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 909 0.0
> AT2G40475.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G56260.2);
Has 477 Blast hits to 219 proteins in 41 species: Archae -
0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses
- 0; Other Eukaryotes - 177 (source: NCBI BLink). | chr2:16906911-16908128
REVERSE LENGTH=1218
Length=1218
Score = 909 bits (492), Expect = 0.0
Identities = 562/594 (95%), Gaps = 11/594 (2%)
Strand=Plus/Plus
Query 33 TCAGAAGACGACACTAATGGAGTCAGATCTTCAAAGATAATCGTAAAGGAGAGCTCTCAG 92
|||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 338 TCAGAAGACGACTCTAATGGAGTCATATCTTCAAAGATAATCGTCAAGGAGAGCTCTCAG 397
Query 93 GTCAATTCATCGTCAAGAATCTATTACTACGGCGGAGCCTCCGTGCCATTTTTATGGGAG 152
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 398 GTCAATTCATCGTCAAGAATCTATTACTACGGCGGAGCCTCCGTGCCTTTTTTATGGGAG 457
Query 153 ACACAACCAGGGACACCAAAACACT-CTCTTTTCTCTGAATCCCTT-CG-CGTTCCTCCA 209
|||| |||||||||||||||||| | ||||||||||||||| | || || | ||||||||
Sbjct 458 ACACGACCAGGGACACCAAAACA-TGCTCTTTTCTCTGAAT-CATTACGTC-TTCCTCCA 514
Query 210 TTAACGCCACCTCCGTCGTATTACTCATCATCTCCCTCCTCCGGGAACCATA-TGAGTAA 268
||||||||||| || |||||||||||||||||| ||||||||||||| || | |||||||
Sbjct 515 TTAACGCCACCCCCTTCGTATTACTCATCATCTTCCTCCTCCGGGAA-CAAACTGAGTAA 573
Query 269 AGCTAGAACG---AAACAAACTAGATTCGTGAAGACTTTGTTGTCACGTCACGTGTCGCG 325
||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 574 AGCGAGAACGATTAAACAAACTCGATTCGTGAAGACTCTGTTGTCACGTCACGTGTCGCG 633
Query 326 TCCTTCGTTTTCTTGGTCGTCTACGTCTTCATCTTCTTCCTCTTCGTACTCTTCCTCGTC 385
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 634 TCCTTCGTTTTCTTGGTCGTCTGCGTCTTCTTCTTCTTCCTCTTCGTACTCTTCCTCGTC 693
Query 386 TCCTCCATCCAAAGCAGAGCACCGTCCGAGAAAATGTTATTCTTGTTCGAGATCGTACGT 445
||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 694 TCCTCCATCTAAAGTAGAGCATCGTCCGAGAAAATGTTATTCTTGTTCGAGATCGTACGT 753
Query 446 TAAGGAAGACGACGAGGAAGAGATTGGGTCGTCGTCTCCAACGTCGACGTTGTGTTATAA 505
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 754 TAAGGAAGACGACGAGGAAGAGATTGTGTCGTCGTCTCCAACGTCGACGTTGTGTTATAA 813
Query 506 AAGAGGGTTTAGTTCATCTATGGGGAGTATGAAAAGAGCTTTGTGTTCTGTTCTTAGCCA 565
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 814 AAGAGGGTTTAGTTCATCTATGGGGAGTATGAAGAGAGCTTTGTGTTCTGTTCTTAGCCA 873
Query 566 TGGATCTAGTCGTAAAGATCTTAGATTGATGTAATGGTTTTTCCATGTTGTTCT 619
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 874 TGGATCTAGTCGTAAAGATCTTAGATTGATGTAATGGTTTTTCCATGGTGTTCT 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29839083318
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5