BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934855
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40490.1 | Symbols: HEME2 | Uroporphyrinogen decarboxylase |... 1973 0.0
> AT2G40490.1 | Symbols: HEME2 | Uroporphyrinogen decarboxylase
| chr2:16912845-16915177 FORWARD LENGTH=1490
Length=1490
Score = 1973 bits (1068), Expect = 0.0
Identities = 1175/1227 (96%), Gaps = 6/1227 (0%)
Strand=Plus/Plus
Query 1 TTGTCTCGGGGATCTGAAAAATGTCAATCCTCCAAGtctctacttcatctctttcttctt 60
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 97 TTGTCTCGGGGATCTGAAAAATGTCAATCCTTCAAGTCTCTACTTCGTCTCTTTCTTCTT 156
Query 61 ctactcttctctccatctctcccagaaaatctctctcgtct-cCTAAGTCATGCCGGATA 119
|||||||||||||||| |||||||||||||||||||| ||| || |||||||||||||||
Sbjct 157 CTACTCTTCTCTCCATATCTCCCAGAAAATCTCTCTCATCTACC-AAGTCATGCCGGATA 215
Query 120 GTTCGTTGTTCCGTCGAGGGAACCACTGTAACCGAGCGAAAAATCTCGGCAACCAGCGAG 179
||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 216 GTTCGATGTTCCGTCGAGGGAACTACTGTAACCGAGAGAAAAGTCTCGGCAACCAGCGAG 275
Query 180 CCTCTTCTTCTGAGAGCTGTTAAAGGTGAAGTTGTTGATAGACCTCCGGTTTGGCTTATG 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 CCACTTCTTCTGAGAGCTGTTAAAGGTGAAGTTGTTGATAGACCTCCGGTTTGGCTTATG 335
Query 240 AGGCAAGCTGGGAGGTACATGAAGAGTTATCAAACTCTCTGTGAGAAGTATCCTTCTTTC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 AGGCAAGCTGGGAGGTACATGAAGAGTTATCAAACTCTCTGTGAGAAGTATCCTTCTTTC 395
Query 300 CGAGATAGGTCAGAGAATGCGGATCTTGTGGTGGAAATTTCTCTGCAGCCATGGAAGGTG 359
||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 396 AGAGATAGATCAGAGAATGCAGATCTTGTGGTGGAAATTTCTTTGCAGCCATGGAAGGTG 455
Query 360 TTTAAGCCAGATGGGGTGATTCTGTTCTCAGACATTCTCACTCCATTGTCTGGAATGAAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TTTAAGCCAGATGGGGTGATTCTGTTCTCAGACATTCTCACTCCATTGTCTGGAATGAAC 515
Query 420 ATACCTTTCGACATTGTTAAAGGAAAAGGTCCTATCAT-TTTCAACCCGCCACAGTCAGC 478
|||||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||
Sbjct 516 ATACCTTTCGACATTGTTAAAGGAAAAGGTCCTATCATCTTT-AACCCGCCTCAATCAGC 574
Query 479 TGCCGACGTTGATCAAGTTAGAGAATTCATACCTGAGGAATCTGTACCTTATGTTGGAGA 538
||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 575 TGCCGACGTTGCTCAAGTTAGAGAATTCGTACCAGAGGAATCTGTTCCTTATGTTGGAGA 634
Query 539 AGCACTCAAAAGATTAAGAAATGAGGTGAACAACGAAGCTGCTGTTCTGGGTTTTGTTGG 598
|||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 635 AGCACTCAGAAGATTAAGAAATGAGGTGAACAATGAAGCCGCTGTTCTGGGATTTGTTGG 694
Query 599 AGCTCCATTTACTCTTTCTTCGTATGTGATAGAAGGTGGCTCATCTAAGAACTTCACACA 658
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 695 AGCTCCATTTACACTTTCTTCGTATGTAATCGAAGGTGGCTCATCTAAGAACTTCACACA 754
Query 659 GATAAAAAGATTAGCTTTTTCTCAACCCAAGGTTCTACATGCTTTACTCCAGAAGTTCAC 718
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 755 GATAAAAAGATTAGCTTTTTCTCAACCCAAGGTTCTACATGCCTTACTCCAGAAGTTCAC 814
Query 719 AACCTCGATGATCACGTACATACGTTATCAAGCAGATAGCGGAGCTCAAGCTGTACAAAT 778
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 815 AACCTCGATGATAACGTACATACGCTATCAAGCAGATAGCGGAGCTCAAGCTGTGCAAAT 874
Query 779 ATTCGACTCTTGGGCTACCGAGCTTAGCCCGGTGGATTTTGAAGAGTTTAGCTTACCTTA 838
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 875 ATTCGACTCTTGGGCAACCGAGCTTAGCCCGGTGGATTTTGAGGAGTTTAGCTTACCTTA 934
Query 839 TCTTAAACAGATTGTGGAAGCTGTGAAACAAACTCACCCAAACCTACCTCTCATACTGTA 898
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 935 TCTCAAACAGATTGTGGAAGCTGTGAAACAAACTCACCCAAACCTACCTCTCATACTTTA 994
Query 899 TGCAAGTGGATCAGGAGGTTTGCTAGAGAGACTGGCTAGAACCGGTGTGGATGTTGTGAG 958
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 995 TGCTAGTGGATCAGGAGGTTTGCTAGAGAGACTGGCTCGGACCGGTGTGGATGTTGTGAG 1054
Query 959 CTTGGACTGGACTGTAGACATGGCTGAAGGAAGAGACCGGTTAGGAAGAGACATAGCGGT 1018
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1055 CTTGGACTGGACTGTGGACATGGCTGAAGGAAGAGACCGGCTAGGAAGAGACATAGCAGT 1114
Query 1019 TCAAGGAAACGTGGATCCGGGAGTTCTATTTGGATCGAAAGAATTTATCACAAGCAGGAT 1078
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1115 TCAAGGAAACGTTGATCCGGGAGTTCTATTTGGATCGAAAGAATTTATCACAAGCCGGAT 1174
Query 1079 TCATGATACTGTGAAGAAAGCTGGGAGAGATAAACACATTCTCAACTTGGGGCATGGTAT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TCATGATACTGTGAAGAAAGCTGGGAGAGATAAACACATTCTCAACTTGGGGCATGGTAT 1234
Query 1139 AAAAGTTGGAACCCCTGAAGAGAATGTTGCACACTTCTTTGAGGTTGCTCAAGGAATTAG 1198
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1235 TAAAGTTGGAACCCCTGAAGAGAATGTAGCACACTTCTTTGAGGTTGCTCAAGAAATTAG 1294
Query 1199 ATATTAAGAGAAAGAGT-AATGATGAT 1224
||||||||||||||| | |||| ||||
Sbjct 1295 ATATTAAGAGAAAGAATGAATG-TGAT 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5