BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934856
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40560.1 | Symbols: | Protein kinase superfamily protein | ... 1029 0.0
AT2G40500.1 | Symbols: | Protein kinase superfamily protein | ... 767 0.0
> AT2G40560.1 | Symbols: | Protein kinase superfamily protein
| chr2:16938705-16939616 REVERSE LENGTH=912
Length=912
Score = 1029 bits (557), Expect = 0.0
Identities = 805/922 (87%), Gaps = 28/922 (3%)
Strand=Plus/Plus
Query 20 GATGGAGCAACTTCGGAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGTCGAAGGT 79
|||||| ||| || | |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 6 GATGGAACAAATTTGCAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGACGAAGCT 65
Query 80 CTCTTCTCTTGGCGGAGGCAGCTTCGGTCGCGTCTCTCTCGAGAAGGACTCTAACTCCGG 139
||||||||||||| |||| | ||||||| ||||||||||||||||||||| |||| |
Sbjct 66 CTCTTCTCTTGGCCGAGGGAACTTCGGTTACGTCTCTCTCGAGAAGGACTCCAACT-C-- 122
Query 140 CCGACTCTACGCAAAGAAGTCATCGCGGATGCATCTCCAAAAGATTCTCGAGAAGGAGCT 199
|||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 123 CCGACTTTACGCAAAGAAGTCATCGCCGATGCATCTCAAAAAGATTCTCGAGAAGGAGCT 182
Query 200 CAGGATCATGCATCGTTTCCGCAATCATCCTCGCATCGTCCAAGCTTCAAACAAGCTTCA 259
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 183 CAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTCCAAGCCTCAAACAAGCTTCA 242
Query 260 CTTTCAAA-CAAAACCCTATGAATATTGCAACATTTTTATGGAGTACGCCTCCAAAGGTA 318
||| |||| | || ||||| ||||||||| |||| | |||||||||||||||||||||||
Sbjct 243 CTTACAAATCCAA-CCCTACGAATATTGCTACATCTATATGGAGTACGCCTCCAAAGGTA 301
Query 319 ATCTCTATAAGATTT-TATCTGGTTTCCC-CGACAAATCACAGCCCATACCAGAGTCTTT 376
||||| ||| | ||| ||| |||||||| || ||| | |||| ||||| ||||||||
Sbjct 302 ATCTCCATAGG-TTTATATATGGTTTCCGTCGG-AAAGAAGAGCCGATACCTGAGTCTTT 359
Query 377 GGTCAGTCGCGCGGCTCGTATGATCCTAGAAGGACTCGTGGCTCTTCACTCCCATGGTTA 436
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 GGTCAGTCGCACGGCTCGTATGATCCTAGAAGGACTCGAGGCTCTTCACTCCCATGGTTA 419
Query 437 CGTTCACTGCGACCTCAAGCCATCCAACGTTCTCGTCTTCCCTTCCACAACTCCTGGAGA 496
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 CGTTTACTGCGACCTCAAGCCATCCAACGTTCTCCTCTTCCCTTCCACAACTCCTGGAGA 479
Query 497 GCCGTGGGATCTCAAGCTTGCTGATTTCGGATCATCCAAGGAACCTGATTCTGAAT-ATG 555
|||||||||||||||||||||||||||||| |||||||| || ||||| | || | |||
Sbjct 480 GCCGTGGGATCTCAAGCTTGCTGATTTCGGTTCATCCAAAGAGCCTGACACCGA-TCATG 538
Query 556 ATTTTATGTCCCTTGGTACGGCTCAGTACATACCATCAGAGTCTTTTGGGCCAAACGGAC 615
|| || |||||||||||| | | ||||||| || | || ||||||| ||||||||||
Sbjct 539 ATCCTACGTCCCTTGGTACTGTTGAGTACATGCCCCCGGACTCTTTTGTACCAAACGGAC 598
Query 616 TGATCAATCCGGGACATATCGATCC-GCGCCTTGATATATATGCTCTAGGGTGTGTGGTT 674
||||| ||||||||||||||||||| || ||||||||||||| |||||||||||||||||
Sbjct 599 TGATCGATCCGGGACATATCGATCCAGC-CCTTGATATATATTCTCTAGGGTGTGTGGTT 657
Query 675 TATGAGATGTTTGGAGCTTTACCGAAGCAGGAGTACTTTGAATA-TTATTACG-ATTGG- 731
||||||||||||||||| |||| | |||||||||||||| | || ||||| || ||
Sbjct 658 AATGAGATGTTTGGAGCTATACCTATCCAGGAGTACTTTGACGAATT-TTACGTAT-GGC 715
Query 732 ATATTGCATCGA-GAAATCTCCCCGGAGGCTCAAGATTTCTTGAGGCGGTGCCG-TGACA 789
|| |||| | || | ||||| ||| |||||||||||||||| ||||| ||| | |||||
Sbjct 716 AT-TTGCGT-GACGTTATCTCTCCGCAGGCTCAAGATTTCTTAAGGCGATGC-GATGACA 772
Query 790 TGCATCCACACAGGCCCAACGCGACAGAGCTCTTGAACCATTCTTTCATTACGCAGAG-A 848
||| | ||| |||||||| |||||| ||||||||||| ||| |||| ||||| || || |
Sbjct 773 TGCGTTCACGCAGGCCCACCGCGACTGAGCTCTTGAAACATCCTTTTATTACACA-AGGA 831
Query 849 CTTCCATGGCCAACCACAGAAAACGACAAGGAGATATCAGCTAGGTCGTTAATTCCAAGT 908
||||||| |||||| |||||| || ||||||||||||| ||||||||| |||||||||
Sbjct 832 CTTCCATCGCCAACAACAGAAGACAACAAGGAGATATC---TAGGTCGTTGATTCCAAGT 888
Query 909 GTCTCCAAGCTTCTTTTGACCT 930
|||| ||||||||||||||||
Sbjct 889 TTCTCGAAGCTTCTTTTGACCT 910
> AT2G40500.1 | Symbols: | Protein kinase superfamily protein
| chr2:16916330-16917217 FORWARD LENGTH=888
Length=888
Score = 767 bits (415), Expect = 0.0
Identities = 769/930 (83%), Gaps = 64/930 (7%)
Strand=Plus/Plus
Query 21 ATGGAGCAACTTCGG-AGAGATGATG-ATTGGATTGTGGACGAGTCTTCGTTGTCGAAGG 78
|||||| ||||| || |||||||||| ||| ||||||||||||||||||| | | |||
Sbjct 1 ATGGAGAAACTT-GGCAGAGATGATGAATT-GATTGTGGACGAGTCTTCG-T-T-GAA-A 54
Query 79 T-C-TCT-TC-TCTTGGCGGAGGCAGCTTCGGTCGCGTCTCTCTCGA-GAAGGACTCTAA 133
| | ||| || |||| || ||| | |||| || ||||| |||| | ||||||||| ||
Sbjct 55 TCCTTCTCTCTTCTTTGCCAAGGTAACTTCAGTTACGTCTGTCTC-ATGAAGGACTCCAA 113
Query 134 CTCCGGCCGAC-TCTACGCAAAGAAGTCATCGCGGATGCATCTCCAAA-AGATTCTCGAG 191
| | |||| | | ||||||||||||||||| |||||| | |||| |||||||||||
Sbjct 114 AT-C--TCGACGT-TGCGCAAAGAAGTCATCGCCGATGCAGC-ACAAACAGATTCTCGAG 168
Query 192 AAGGAGCTCAGGATCATGCATCGTTTCCGCAATCATCCTCGCATCGTCCAAGCTTCAAAC 251
||||| ||| ||||||||||||||||||| | |||| ||||||||||||||| ||||||
Sbjct 169 AAGGAACTCCGGATCATGCATCGTTTCCGTGACCATCATCGCATCGTCCAAGCCTCAAAC 228
Query 252 AAGCTTCACTTTCAAA-CAAAACCCTATGAATATTGCAACATTTTTATGGAGTACGCCTC 310
||| ||||| | |||| | ||||||| || | | ||| |||| | |||||||||||| ||
Sbjct 229 AAGTTTCACATACAAATC-AAACCCTCTG-A-A-TGCTACATCTATATGGAGTACGCGTC 284
Query 311 CAAAGGTAATCTCTATAAGATTT-TATCTGGTTT-CCCCGACAAATCACAGCCCATACCA 368
| ||||||||||| ||||| ||| |||||||||| || ||||| | | |||||
Sbjct 285 CGAAGGTAATCTCCATAAG-TTTATATCTGGTTTGGAAGGA-AAATC-C-G----TACCA 336
Query 369 GAGTCTTTGGT-CAGTCGCGCGGCTCGTATGATCCTAGAAGGACTCGTGGCTCTTCACTC 427
||||||||||| || ||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 337 GAGTCTTTGGTCCA-ACGCACGGCTCGTATGATCCTAGAAGGACTTGAGGCTCTTCACTC 395
Query 428 CCATGGTTACGTTCACTGCGACCTCAAGCCATCCAACGTTCTCGTCTTCCCTTCCACA-A 486
||||||||||||||||||| | |||| |||||||||||||||| ||||||| |||| | |
Sbjct 396 CCATGGTTACGTTCACTGCAATCTCAGGCCATCCAACGTTCTCCTCTTCCCGTCCA-AGA 454
Query 487 CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGATCATCCAAGGAACCTGATT 546
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 455 CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGCTCATCCAAGGAACCTGATT 514
Query 547 CTGAATATGATTTTATGTCCCTTGGTAC-G-G-CTCAGTACATACC-ATCAGAGTCTTTT 602
| || |||| || |||| | ||||||| | | || ||||||| || || ||||||||||
Sbjct 515 CCGATTATGGTTGGATGTACTTTGGTACGGCGCCTAAGTACATGCCAAT-AGAGTCTTTT 573
Query 603 GGGCCAAACGGACTGATCAATCCGGGACATATCGATCCGCGCCTTGATATATATGCTCTA 662
||||| || ||| | | || | ||||||||| ||||||||||||||||||||
Sbjct 574 GGGCCTAAGGGA--G-T-GAT------C--ATCGATCCGAGCCTTGATATATATGCTCTA 621
Query 663 GGGTGTGTGGTTTATGAGATGTTTGGAGCTTTACCGAAGCAGGAGTACTTTGAATATTAT 722
||||||||||||||||||||| |||||||| |||| | ||||| |||||||| | |||
Sbjct 622 GGGTGTGTGGTTTATGAGATGCTTGGAGCTATACCTATCCAGGACTACTTTGACGAATAT 681
Query 723 TACGATTGGATAT-TGCATCGAGAAATCTCCCCGGAGGCTCA-AGATTTCTTGAGGCGGT 780
||||| |||| || ||| ||| | ||||| ||||||||| | ||||||||| || ||||
Sbjct 682 TACGAATGGA-ATCTGCGTCGTCATATCTCTCCGGAGGCT-AGAGATTTCTTAAGCCGGT 739
Query 781 GCCGTGACATGCATCCACACAGGCCCAACGCGACAGAGCTCTTGAACCATTCTTTCATTA 840
|| || ||||||||||||||||||||| |||| || | |||||||||||| |||||||||
Sbjct 740 GCAGTAACATGCATCCACACAGGCCCACCGCGGCATATCTCTTGAACCATCCTTTCATTA 799
Query 841 CGCAGAGACTTCCATGGCCAACCACAGAAAACGACAAGGAGATATCAGCTAGGTCGTTAA 900
| || | |||||||| |||||| |||||| || ||||||||||||| ||||||||| |
Sbjct 800 CTCAAATACTTCCATCGCCAACAACAGAAGACAACAAGGAGATATC---TAGGTCGTTGA 856
Query 901 TTCCAAGTGTCTCCAAGCTTCTTTTGACCT 930
|||||||| |||| |||||||||||| |||
Sbjct 857 TTCCAAGTTTCTCGAAGCTTCTTTTGGCCT 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46567054269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5