BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg934858 Length=1594 Score E Sequences producing significant alignments: (Bits) Value AT2G40520.1 | Symbols: | Nucleotidyltransferase family protein... 1742 0.0 AT3G56320.1 | Symbols: | PAP/OAS1 substrate-binding domain sup... 584 8e-166 > AT2G40520.1 | Symbols: | Nucleotidyltransferase family protein | chr2:16923068-16925914 FORWARD LENGTH=1917 Length=1917 Score = 1742 bits (943), Expect = 0.0 Identities = 1342/1532 (88%), Gaps = 38/1532 (2%) Strand=Plus/Plus Query 11 GTTTCTTGTTCAAATGGCTGATCATCAA-GAGAAGGTTCCAGTCTCTTTGTCT-CAAGCC 68 |||| |||||||||||||||||||| || || ||||||||||||||||| ||| | | || Sbjct 157 GTTTTTTGTTCAAATGGCTGATCATAAAGGA-AAGGTTCCAGTCTCTTTATCTGC-ATCC 214 Query 69 TCGTCATCATCGTCTCTGTCCCCAACAACAACGCCAATAG-GTGAAGAATTGTGGTTGAT 127 || ||||| | ||||||||| |||| |||||||||||||| | | ||| |||||||||| Sbjct 215 TCTTCATCGTTGTCTCTGTCTCCAAAAACAACGCCAATAGAG-GCGGAAGTGTGGTTGAT 273 Query 128 TGCTGAGGAAAGGGCTCAGGAGATACTATTTGCCATCCAACCTATGTATCTTTCAGAAAG 187 |||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||| Sbjct 274 TGCTGAGGCAAGGGCTCAGGAGATACTATGTGCCATCCAACCTAACTATCTTGCAGAAAG 333 Query 188 ATGTAGGAATGAGATCATCAATCATCTCCAGACTCTTATGAGGGAACGTCTTGGAATTGA 247 | |||||||| ||||||||| | |||||||||||||| || ||||||||||||||||||| Sbjct 334 AAGTAGGAATAAGATCATCAGTAATCTCCAGACTCTTCTGTGGGAACGTCTTGGAATTGA 393 Query 248 GGTCTTTTTATTTGGTTCGGTGCCATTAAAAACCTATCTCCCAGATGGAGATATTGATCT 307 ||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 394 GGTGTATTTATTTGGTTCAATGCCATTAAAAACCTATCTCCCAGATGGAGATATTGATCT 453 Query 308 GACAGTTCTAACTCCTTATGGTAT-GGAGGAGGACTGTGCTAAAGCATTGCGTAATATAC 366 |||||||||||||| | ||| | | ||||||||||||||||| |||| || || | | | Sbjct 454 GACAGTTCTAACTCATCATGCT-TCGGAGGAGGACTGTGCTAGAGCAGTGTGTTGTGTGC 512 Query 367 TTGAAGCTGAAAGGGGAGAAT-CAGATTTCCAAGTAACTGATGTCCAGTATATCCATGCA 425 |||||||||||| |||| ||| ||||| |||||||||||| ||| |||||| |||| ||| Sbjct 513 TTGAAGCTGAAATGGGA-AATTCAGATCTCCAAGTAACTGGTGTTCAGTATGTCCAAGCA 571 Query 426 CAGGTCAAGGTCATAAAGTGCACTATCAGGAACGTTGCTTTGGATATCTCCTTCAATCAA 485 ||||||| |||||||||||| |||||||| |||||||||| |||||||||||||||||| Sbjct 572 AAGGTCAAAGTCATAAAGTGCTCTATCAGGGACGTTGCTTTCGATATCTCCTTCAATCAA 631 Query 486 ATGGCGGGACTAT-CTGCTTTATGTTTTCTGGAGCAGGTTGACCGGGCTTTTGGTAGAGA 544 ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| Sbjct 632 TTGGCGGGACTAGGC-GCTTTATGTTTTCTGGAGCAGGTTGACAAAGCTTTTGGTAGAGA 690 Query 545 CCATCTGTTCAAACGTAGCATCATTTTGATTAAGGCCTGGTGTTTTTATGAAAGCCGTAT 604 ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 691 CCATCTGTTCAAAAAAAGCATCATTTTGGTTAAGGCCTGGTGTTTTTATGAAAGCCGTAT 750 Query 605 TCTCGGTGCCAACACTGGATTGATTTCGACGTATGCATTGGCTATACTCGTCTTGAACAT 664 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 751 TCTCGGTGCCAACTCTGGATTGATTTCGACATATGCATTGGCTATACTCGTCTTGAACAT 810 Query 665 CGTCAACATGTCTTATTCATCAGTATCTGGCCCTTTAGCTGTACTGTATAAGTTCATGGA 724 |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| | Sbjct 811 CGTCAACATGTCTTATTCATCACTGTCTGGCCCTTTAGCTGTTCTGTATAAGTTCATAAA 870 Query 725 TTTCTATGGATCATTTGATTGGGAGAATTACTGTATCACGGTCACTGGTCCGGTCCCGAT 784 || ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 871 TTACTATGGATCATTTGATTGGAAGAATTACTGTGTCACGGTCACTGGTCCGGTCCCGAT 930 Query 785 ATCATCTTTTCCAGATATTACGGAAACCAGAAATCATGAAGTTTTCCTAGATGAGAAGTT 844 ||||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||| Sbjct 931 ATCATCTCTTCCAGATATTACTGAAACCGGAAATCATGAAGTGTTCCTAGATGAGAAGTT 990 Query 845 CTTCAGAGAATGCATTGAGTCATATTC-GGGGCCAGCTA-ATGTTGTTGAAGCCAACAGG 902 ||||||||||||||| |||| |||||| |||| | || | ||||||||||||| |||| Sbjct 991 CTTCAGAGAATGCATGGAGTTATATTCTGGGGAAA-CTGGA-GTTGTTGAAGCCAGCAGG 1048 Query 903 AAATATTTTCCTGTAAAACATTACAACATACTGGATCCTCTGAAACACAGCAATAACCTT 962 |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 1049 AAATATTTTCCTGTAAAATATTACAACATACTGGATCCTCTGAAACACAGTAACAACCTT 1108 Query 963 GGACGTAGTGTGTCAGAAGGAAATGCGATACGTTTAAGACATTGTTTTA-GAAGGGGAGC 1021 |||||||||||| || |||||||| | ||||||||||| ||||||||| | ||| || Sbjct 1109 GGACGTAGTGTGACAAAAGGAAATATGGTACGTTTAAGAAATTGTTTTATGCTGGG-AGT 1167 Query 1022 TCAGAAGCTCAGAGATGTGCTTACACTACCTGGAGAGACCGTGGGTTGGAAACTGGAGAA 1081 |||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 1168 TCAGAAACTCAGAGATGTGCTTACACTGCCTGGAGAGAACGTGGGTTGGAAACTGGAGAA 1227 Query 1082 CTTCTTTGGTAATTCACTGGACAGGAACGGTAAGGGACAAAGACAAGACGTAGAGGAGCC 1141 |||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1228 GTTCTTTAATGTTTCACTGGAGAGGAACGGTAAGGGACAAAGACAAGACGTAGAGGAGCC 1287 Query 1142 TGTCATCCCGTTTGGCACTGGAAAAGCAGATTACTCT-AATCTTAGAGGAGATTTTGACG 1200 |||| || |||||||||||||| |||||| |||||| || |||| ||||||||||||| Sbjct 1288 TGTCGTCGCGTTTGGCACTGGAGCAGCAGACTACTCTCAA-CTTAAAGGAGATTTTGACA 1346 Query 1201 GATACTTCTTATGTT-TTATATACGGGAAGTGGTTTCACAGAGAGAGCCTGCATAACTGG 1259 ||||| | || | ||||||||||||||||||||||| | |||||||||||||||||| Sbjct 1347 GATACCGCA-ATAATCTTATATACGGGAAGTGGTTTCACGGTGAGAGCCTGCATAACTGG 1405 Query 1260 ATCCCTCAGGGTCTAGACATAAGTTCCTGGG-AAACTGTCCGCTGGTTTATGA-CAAGCC 1317 |||||| | ||||||||| || |||||||| ||| | || ||| | ||||| || | Sbjct 1406 CTCCCTCCGAGTCTAGACACAACTTCCTGGGCAAA-TATCAGCTTCTATATGAGCAGGGT 1464 Query 1318 GAAGGAATGTTTTCAATGGGAGGTATCTGGATGGAGGATCAAC-AT-C-AAC-ATCGAT- 1372 |||||||| ||||||||||||| ||| ||| ||| | || | || | || ||| | Sbjct 1465 -AAGGAATGGTTTCAATGGGAGGAATCAGGAGGGACCAACATCCATGCCAAATATCAAAC 1523 Query 1373 -G-C-C-AAACAAGCGGAAATCAAAAGGAACAGGCACTTACATTCCTGAAATGGGTCAAC 1428 | | | |||||| |||| |||||| |||||||||||||||||||||| |||| || ||| Sbjct 1524 AGTCACCAAACAATCGGAGATCAAACGGAACAGGCACTTACATTCCTGGAATGAGTAAAC 1583 Query 1429 AATCTTACACCGGTAGGTCCAGTAGCA--AA-CCGAGCACAGTGAAATCATTACCTTCAG 1485 ||||| |||||| | ||| |||||||| || |||||||| ||||| ||||||||||||| Sbjct 1584 AATCTAACACCGCTGGGTGCAGTAGCAGCAAACCGAGCACGGTGAAGTCATTACCTTCAG 1643 Query 1486 CATCTCAGACTCATCAGTGCAAAAAGAATCCT 1517 ||||| ||||||| ||| ||||||||||||| Sbjct 1644 CATCTGAGACTCAAGAGTCCAAAAAGAATCCT 1675 > AT3G56320.1 | Symbols: | PAP/OAS1 substrate-binding domain superfamily | chr3:20885894-20889656 REVERSE LENGTH=2424 Length=2424 Score = 584 bits (316), Expect = 8e-166 Identities = 876/1137 (77%), Gaps = 75/1137 (7%) Strand=Plus/Plus Query 101 GCCAATAGGTGAAGAATT-GTGGTTGATTGCTGAGGAAAGGGCTCAGGAGATACTATTTG 159 ||| |||| || || ||| ||| ||||||| ||||| || ||||| ||||||| |||| Sbjct 412 GCCGATAGATGCAG-ATTCTTGGATGATTGCAGAGGAGAGAGCTCATGAGATAC--TTTG 468 Query 160 C-C-ATCCAACCT-ATGTATCTTTCAGAAAGATGTAGGAATGAGATCATCAATCATCT-C 215 | | ||||||||| | | ||||||| ||| |||||||||||||||| || || | | Sbjct 469 CACTATCCAACCTGCCCT-TGTTTCAGACAGAAGTAGGAATGAGATCATTGATTATGTAC 527 Query 216 CAGACTCTTATGAGGGAACGTC-T--TGGAATTGAGGTCTTTTTATTTGGTTCGGTGCCA 272 | |||||||| | | | ||| | |||||||||||||||| ||||||||| |||||| Sbjct 528 GA-ACTCTTATCA-TG-A-GTCATGAGGGAATTGAGGTCTTTTCATTTGGTTCAGTGCCA 583 Query 273 TTAAAAACCTATCTCCCAGATGGAGATATTGATCTGACAGTTCTAACTCCTTATGGTATG 332 |||||||||||||||| || || ||||| |||||||| || |||||| | |||| Sbjct 584 CTAAAAACCTATCTCCCGGACGGGGATATCGATCTGACTGTCCTAACTAAGCAAAATATG 643 Query 333 GAGGAGGACTGTGCTAAAG-C-ATTGCGTAATATACTTGAAG-CTGAAAG-GGGAGAATC 388 || || || | | || | | |||| | | || ||| || || ||| ||||||| Sbjct 644 GATGACGA-T-TTTTATGGACAATTGTGCAGTAGGCTT-CAGAATG-AAGAAAGAGAATC 699 Query 389 AGATTTCCAAGTAACTGATGTCCAGTATATCCATGCACAGGTCAAGGTCATAAAGTGCAC 448 || ||||| | ||| ||||| |||| ||||| ||||||||||||||||||||| |||| Sbjct 700 TGAATTCCATGCAACAGATGTTCAGTTTATCCCTGCACAGGTCAAGGTCATAAAATGCAA 759 Query 449 TATCAGGAACGTTGCT-TTGGATATCTCCTTCAATCAAATGGCGGGACTATCTGCTTTAT 507 |||||||||| ||||| || |||||||| || ||||||| ||| || || | |||||||| Sbjct 760 TATCAGGAACATTGCTGTT-GATATCTCTTTTAATCAAACGGCAGGTCTCTGTGCTTTAT 818 Query 508 GTTTTCTGGAGCAGGTTGACCGGGCT-TTTGGTAGAGACCATCTGTTCAAACGTAGCATC 566 ||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||||||||| Sbjct 819 GTTTTCTGGAGCAGGTTGACCAA-CTCTTTGGGAGAGATCATCTTTTCAAGCGTAGCATC 877 Query 567 ATT-TTGATTAAGGCCTGGTGTTTTTATGAAAGCCGTATTCTCGGTGCCAACACTGGATT 625 || ||| | || || ||||| | ||| || || || ||||| ||||| ||||||||||| Sbjct 878 ATCCTTG-TCAAAGCTTGGTGCTATTACGAGAGTCGAATTCTTGGTGCTAACACTGGATT 936 Query 626 GATTTCGACGTATGCATTGGCTA-TACTCGTCTTGAACATCGTCAACATGTCTT-ATTCA 683 ||| || || ||||||||||| | |||| || ||| ||||| ||||| ||| || ||||| Sbjct 937 GATCTCAACATATGCATTGGC-AGTACTAGTTTTGTACATCATCAACCTGT-TTCATTCA 994 Query 684 TCAGTATCTGGCCCTTTAGCTGTACTGTATAAGTTCATGGATTTCTATGGATCATTTGAT 743 || |||||||||||||||| || |||||||||||| |||||| |||||| ||||||||| Sbjct 995 TCTTTATCTGGCCCTTTAGCGGTTCTGTATAAGTTCTTGGATTACTATGGTTCATTTGAT 1054 Query 744 TGGGAGAATTACTGTATCACG-GTCACTGGTCCGGTCCCGATATCATCTTTTCCAGATA- 801 ||| | || |||||||||| | |||| |||||| || || ||||| || ||||||| | Sbjct 1055 TGGAACAACTACTGTATCA-GTGTCAATGGTCCTGTGCCAATATCGTCCCTTCCAGA-AC 1112 Query 802 TTACGGAA--A-C-C-AGAAA-T---CATGAAGTT-TTCCTAGATGAGAAGTTCTTCAGA 851 |||| | | | | | ||||| | ||||| ||| || || || |||||||| || ||| Sbjct 1113 TTACAGCAGCATCTCCAGAAAATGGGCATGA-GTTATTACTTGACGAGAAGTTTTTAAGA 1171 Query 852 GAA-TGCATTGAGTCATATTCGGGGCCAGCTAATGTTGTTGAAGCCAACAGGAAAT-ATT 909 || || | |||| |||||| | ||| |||| | |||||| | || || | | | Sbjct 1172 -AACTGTGTAGAGTTATATTCTGCTCCAACTAAAGCTGTTGACTCAAAT-GGTCTTGAGT 1229 Query 910 TTCCTGTAAAACAT-TACAACATACTGGATCCTCTGAAACACAGCAATAACCTTGGACGT 968 ||||| | |||||| | ||||||| | |||||||| ||| ||||||| ||||| || | Sbjct 1230 TTCCTATCAAACATCT-CAACATAGTTGATCCTCTAAAATACAGCAACAACCTCGG-CAA 1287 Query 969 A-GTGTGT-CAGAAGGAAATG-CGATACGTTTAAGACATTG-TTTTAGAAGGGGAGCTCA 1024 | |||| | || ||||||||| | | ||| |||||||| | ||||| | ||||||| Sbjct 1288 AAGTGT-TACACAAGGAAATGTCCA-ACGAATAAGACAT-GCTTTTACACTTGGAGCTC- 1343 Query 1025 GAA-GCTCAGAGATGTGCTTACACTACCTGGAGAGACCGTGGGTTGGAAACTGGAGAACT 1083 ||| ||| |||||||| ||| |||||||||| || ||| |||| |||| | ||||||| | Sbjct 1344 GAAAGCTAAGAGATGTTCTTTCACTACCTGGTGACACCATGGGATGGAGATTGGAGAAGT 1403 Query 1084 TCTTTGGTAATTCACTGGACAGGAACGGTAAGGGACAAAGACAAGACGTAGAG-GAGCCT 1142 ||||| |||| || |||| || || |||||||||||||| ||||| || || || || Sbjct 1404 TCTTTCGTAACTCTTTGGAGAGAAATGGTAAGGGACAAAGGCAAGATGT-GAATGATCCC 1462 Query 1143 GTCA-TCCCGTTT-GGCACTGGAAAAGCAGA-TTACTCT-AATCTTAGAGGAGATTT 1195 || | | | ||| || ||||||| | |||| ||| ||| || ||||| |||||||| Sbjct 1463 GTTACTGC--TTTCGGTACTGGAAGATCAGAATTA-TCTGAA-CTTAGTGGAGATTT 1515 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78714454560 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5