BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934858
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40520.1 | Symbols: | Nucleotidyltransferase family protein... 1742 0.0
AT3G56320.1 | Symbols: | PAP/OAS1 substrate-binding domain sup... 584 8e-166
> AT2G40520.1 | Symbols: | Nucleotidyltransferase family protein
| chr2:16923068-16925914 FORWARD LENGTH=1917
Length=1917
Score = 1742 bits (943), Expect = 0.0
Identities = 1342/1532 (88%), Gaps = 38/1532 (2%)
Strand=Plus/Plus
Query 11 GTTTCTTGTTCAAATGGCTGATCATCAA-GAGAAGGTTCCAGTCTCTTTGTCT-CAAGCC 68
|||| |||||||||||||||||||| || || ||||||||||||||||| ||| | | ||
Sbjct 157 GTTTTTTGTTCAAATGGCTGATCATAAAGGA-AAGGTTCCAGTCTCTTTATCTGC-ATCC 214
Query 69 TCGTCATCATCGTCTCTGTCCCCAACAACAACGCCAATAG-GTGAAGAATTGTGGTTGAT 127
|| ||||| | ||||||||| |||| |||||||||||||| | | ||| ||||||||||
Sbjct 215 TCTTCATCGTTGTCTCTGTCTCCAAAAACAACGCCAATAGAG-GCGGAAGTGTGGTTGAT 273
Query 128 TGCTGAGGAAAGGGCTCAGGAGATACTATTTGCCATCCAACCTATGTATCTTTCAGAAAG 187
|||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 274 TGCTGAGGCAAGGGCTCAGGAGATACTATGTGCCATCCAACCTAACTATCTTGCAGAAAG 333
Query 188 ATGTAGGAATGAGATCATCAATCATCTCCAGACTCTTATGAGGGAACGTCTTGGAATTGA 247
| |||||||| ||||||||| | |||||||||||||| || |||||||||||||||||||
Sbjct 334 AAGTAGGAATAAGATCATCAGTAATCTCCAGACTCTTCTGTGGGAACGTCTTGGAATTGA 393
Query 248 GGTCTTTTTATTTGGTTCGGTGCCATTAAAAACCTATCTCCCAGATGGAGATATTGATCT 307
||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GGTGTATTTATTTGGTTCAATGCCATTAAAAACCTATCTCCCAGATGGAGATATTGATCT 453
Query 308 GACAGTTCTAACTCCTTATGGTAT-GGAGGAGGACTGTGCTAAAGCATTGCGTAATATAC 366
|||||||||||||| | ||| | | ||||||||||||||||| |||| || || | | |
Sbjct 454 GACAGTTCTAACTCATCATGCT-TCGGAGGAGGACTGTGCTAGAGCAGTGTGTTGTGTGC 512
Query 367 TTGAAGCTGAAAGGGGAGAAT-CAGATTTCCAAGTAACTGATGTCCAGTATATCCATGCA 425
|||||||||||| |||| ||| ||||| |||||||||||| ||| |||||| |||| |||
Sbjct 513 TTGAAGCTGAAATGGGA-AATTCAGATCTCCAAGTAACTGGTGTTCAGTATGTCCAAGCA 571
Query 426 CAGGTCAAGGTCATAAAGTGCACTATCAGGAACGTTGCTTTGGATATCTCCTTCAATCAA 485
||||||| |||||||||||| |||||||| |||||||||| ||||||||||||||||||
Sbjct 572 AAGGTCAAAGTCATAAAGTGCTCTATCAGGGACGTTGCTTTCGATATCTCCTTCAATCAA 631
Query 486 ATGGCGGGACTAT-CTGCTTTATGTTTTCTGGAGCAGGTTGACCGGGCTTTTGGTAGAGA 544
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 632 TTGGCGGGACTAGGC-GCTTTATGTTTTCTGGAGCAGGTTGACAAAGCTTTTGGTAGAGA 690
Query 545 CCATCTGTTCAAACGTAGCATCATTTTGATTAAGGCCTGGTGTTTTTATGAAAGCCGTAT 604
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 691 CCATCTGTTCAAAAAAAGCATCATTTTGGTTAAGGCCTGGTGTTTTTATGAAAGCCGTAT 750
Query 605 TCTCGGTGCCAACACTGGATTGATTTCGACGTATGCATTGGCTATACTCGTCTTGAACAT 664
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 751 TCTCGGTGCCAACTCTGGATTGATTTCGACATATGCATTGGCTATACTCGTCTTGAACAT 810
Query 665 CGTCAACATGTCTTATTCATCAGTATCTGGCCCTTTAGCTGTACTGTATAAGTTCATGGA 724
|||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| |
Sbjct 811 CGTCAACATGTCTTATTCATCACTGTCTGGCCCTTTAGCTGTTCTGTATAAGTTCATAAA 870
Query 725 TTTCTATGGATCATTTGATTGGGAGAATTACTGTATCACGGTCACTGGTCCGGTCCCGAT 784
|| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 871 TTACTATGGATCATTTGATTGGAAGAATTACTGTGTCACGGTCACTGGTCCGGTCCCGAT 930
Query 785 ATCATCTTTTCCAGATATTACGGAAACCAGAAATCATGAAGTTTTCCTAGATGAGAAGTT 844
||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||
Sbjct 931 ATCATCTCTTCCAGATATTACTGAAACCGGAAATCATGAAGTGTTCCTAGATGAGAAGTT 990
Query 845 CTTCAGAGAATGCATTGAGTCATATTC-GGGGCCAGCTA-ATGTTGTTGAAGCCAACAGG 902
||||||||||||||| |||| |||||| |||| | || | ||||||||||||| ||||
Sbjct 991 CTTCAGAGAATGCATGGAGTTATATTCTGGGGAAA-CTGGA-GTTGTTGAAGCCAGCAGG 1048
Query 903 AAATATTTTCCTGTAAAACATTACAACATACTGGATCCTCTGAAACACAGCAATAACCTT 962
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 1049 AAATATTTTCCTGTAAAATATTACAACATACTGGATCCTCTGAAACACAGTAACAACCTT 1108
Query 963 GGACGTAGTGTGTCAGAAGGAAATGCGATACGTTTAAGACATTGTTTTA-GAAGGGGAGC 1021
|||||||||||| || |||||||| | ||||||||||| ||||||||| | ||| ||
Sbjct 1109 GGACGTAGTGTGACAAAAGGAAATATGGTACGTTTAAGAAATTGTTTTATGCTGGG-AGT 1167
Query 1022 TCAGAAGCTCAGAGATGTGCTTACACTACCTGGAGAGACCGTGGGTTGGAAACTGGAGAA 1081
|||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1168 TCAGAAACTCAGAGATGTGCTTACACTGCCTGGAGAGAACGTGGGTTGGAAACTGGAGAA 1227
Query 1082 CTTCTTTGGTAATTCACTGGACAGGAACGGTAAGGGACAAAGACAAGACGTAGAGGAGCC 1141
|||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GTTCTTTAATGTTTCACTGGAGAGGAACGGTAAGGGACAAAGACAAGACGTAGAGGAGCC 1287
Query 1142 TGTCATCCCGTTTGGCACTGGAAAAGCAGATTACTCT-AATCTTAGAGGAGATTTTGACG 1200
|||| || |||||||||||||| |||||| |||||| || |||| |||||||||||||
Sbjct 1288 TGTCGTCGCGTTTGGCACTGGAGCAGCAGACTACTCTCAA-CTTAAAGGAGATTTTGACA 1346
Query 1201 GATACTTCTTATGTT-TTATATACGGGAAGTGGTTTCACAGAGAGAGCCTGCATAACTGG 1259
||||| | || | ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1347 GATACCGCA-ATAATCTTATATACGGGAAGTGGTTTCACGGTGAGAGCCTGCATAACTGG 1405
Query 1260 ATCCCTCAGGGTCTAGACATAAGTTCCTGGG-AAACTGTCCGCTGGTTTATGA-CAAGCC 1317
|||||| | ||||||||| || |||||||| ||| | || ||| | ||||| || |
Sbjct 1406 CTCCCTCCGAGTCTAGACACAACTTCCTGGGCAAA-TATCAGCTTCTATATGAGCAGGGT 1464
Query 1318 GAAGGAATGTTTTCAATGGGAGGTATCTGGATGGAGGATCAAC-AT-C-AAC-ATCGAT- 1372
|||||||| ||||||||||||| ||| ||| ||| | || | || | || ||| |
Sbjct 1465 -AAGGAATGGTTTCAATGGGAGGAATCAGGAGGGACCAACATCCATGCCAAATATCAAAC 1523
Query 1373 -G-C-C-AAACAAGCGGAAATCAAAAGGAACAGGCACTTACATTCCTGAAATGGGTCAAC 1428
| | | |||||| |||| |||||| |||||||||||||||||||||| |||| || |||
Sbjct 1524 AGTCACCAAACAATCGGAGATCAAACGGAACAGGCACTTACATTCCTGGAATGAGTAAAC 1583
Query 1429 AATCTTACACCGGTAGGTCCAGTAGCA--AA-CCGAGCACAGTGAAATCATTACCTTCAG 1485
||||| |||||| | ||| |||||||| || |||||||| ||||| |||||||||||||
Sbjct 1584 AATCTAACACCGCTGGGTGCAGTAGCAGCAAACCGAGCACGGTGAAGTCATTACCTTCAG 1643
Query 1486 CATCTCAGACTCATCAGTGCAAAAAGAATCCT 1517
||||| ||||||| ||| |||||||||||||
Sbjct 1644 CATCTGAGACTCAAGAGTCCAAAAAGAATCCT 1675
> AT3G56320.1 | Symbols: | PAP/OAS1 substrate-binding domain superfamily
| chr3:20885894-20889656 REVERSE LENGTH=2424
Length=2424
Score = 584 bits (316), Expect = 8e-166
Identities = 876/1137 (77%), Gaps = 75/1137 (7%)
Strand=Plus/Plus
Query 101 GCCAATAGGTGAAGAATT-GTGGTTGATTGCTGAGGAAAGGGCTCAGGAGATACTATTTG 159
||| |||| || || ||| ||| ||||||| ||||| || ||||| ||||||| ||||
Sbjct 412 GCCGATAGATGCAG-ATTCTTGGATGATTGCAGAGGAGAGAGCTCATGAGATAC--TTTG 468
Query 160 C-C-ATCCAACCT-ATGTATCTTTCAGAAAGATGTAGGAATGAGATCATCAATCATCT-C 215
| | ||||||||| | | ||||||| ||| |||||||||||||||| || || | |
Sbjct 469 CACTATCCAACCTGCCCT-TGTTTCAGACAGAAGTAGGAATGAGATCATTGATTATGTAC 527
Query 216 CAGACTCTTATGAGGGAACGTC-T--TGGAATTGAGGTCTTTTTATTTGGTTCGGTGCCA 272
| |||||||| | | | ||| | |||||||||||||||| ||||||||| ||||||
Sbjct 528 GA-ACTCTTATCA-TG-A-GTCATGAGGGAATTGAGGTCTTTTCATTTGGTTCAGTGCCA 583
Query 273 TTAAAAACCTATCTCCCAGATGGAGATATTGATCTGACAGTTCTAACTCCTTATGGTATG 332
|||||||||||||||| || || ||||| |||||||| || |||||| | ||||
Sbjct 584 CTAAAAACCTATCTCCCGGACGGGGATATCGATCTGACTGTCCTAACTAAGCAAAATATG 643
Query 333 GAGGAGGACTGTGCTAAAG-C-ATTGCGTAATATACTTGAAG-CTGAAAG-GGGAGAATC 388
|| || || | | || | | |||| | | || ||| || || ||| |||||||
Sbjct 644 GATGACGA-T-TTTTATGGACAATTGTGCAGTAGGCTT-CAGAATG-AAGAAAGAGAATC 699
Query 389 AGATTTCCAAGTAACTGATGTCCAGTATATCCATGCACAGGTCAAGGTCATAAAGTGCAC 448
|| ||||| | ||| ||||| |||| ||||| ||||||||||||||||||||| ||||
Sbjct 700 TGAATTCCATGCAACAGATGTTCAGTTTATCCCTGCACAGGTCAAGGTCATAAAATGCAA 759
Query 449 TATCAGGAACGTTGCT-TTGGATATCTCCTTCAATCAAATGGCGGGACTATCTGCTTTAT 507
|||||||||| ||||| || |||||||| || ||||||| ||| || || | ||||||||
Sbjct 760 TATCAGGAACATTGCTGTT-GATATCTCTTTTAATCAAACGGCAGGTCTCTGTGCTTTAT 818
Query 508 GTTTTCTGGAGCAGGTTGACCGGGCT-TTTGGTAGAGACCATCTGTTCAAACGTAGCATC 566
||||||||||||||||||||| || ||||| ||||| ||||| ||||| |||||||||
Sbjct 819 GTTTTCTGGAGCAGGTTGACCAA-CTCTTTGGGAGAGATCATCTTTTCAAGCGTAGCATC 877
Query 567 ATT-TTGATTAAGGCCTGGTGTTTTTATGAAAGCCGTATTCTCGGTGCCAACACTGGATT 625
|| ||| | || || ||||| | ||| || || || ||||| ||||| |||||||||||
Sbjct 878 ATCCTTG-TCAAAGCTTGGTGCTATTACGAGAGTCGAATTCTTGGTGCTAACACTGGATT 936
Query 626 GATTTCGACGTATGCATTGGCTA-TACTCGTCTTGAACATCGTCAACATGTCTT-ATTCA 683
||| || || ||||||||||| | |||| || ||| ||||| ||||| ||| || |||||
Sbjct 937 GATCTCAACATATGCATTGGC-AGTACTAGTTTTGTACATCATCAACCTGT-TTCATTCA 994
Query 684 TCAGTATCTGGCCCTTTAGCTGTACTGTATAAGTTCATGGATTTCTATGGATCATTTGAT 743
|| |||||||||||||||| || |||||||||||| |||||| |||||| |||||||||
Sbjct 995 TCTTTATCTGGCCCTTTAGCGGTTCTGTATAAGTTCTTGGATTACTATGGTTCATTTGAT 1054
Query 744 TGGGAGAATTACTGTATCACG-GTCACTGGTCCGGTCCCGATATCATCTTTTCCAGATA- 801
||| | || |||||||||| | |||| |||||| || || ||||| || ||||||| |
Sbjct 1055 TGGAACAACTACTGTATCA-GTGTCAATGGTCCTGTGCCAATATCGTCCCTTCCAGA-AC 1112
Query 802 TTACGGAA--A-C-C-AGAAA-T---CATGAAGTT-TTCCTAGATGAGAAGTTCTTCAGA 851
|||| | | | | | ||||| | ||||| ||| || || || |||||||| || |||
Sbjct 1113 TTACAGCAGCATCTCCAGAAAATGGGCATGA-GTTATTACTTGACGAGAAGTTTTTAAGA 1171
Query 852 GAA-TGCATTGAGTCATATTCGGGGCCAGCTAATGTTGTTGAAGCCAACAGGAAAT-ATT 909
|| || | |||| |||||| | ||| |||| | |||||| | || || | | |
Sbjct 1172 -AACTGTGTAGAGTTATATTCTGCTCCAACTAAAGCTGTTGACTCAAAT-GGTCTTGAGT 1229
Query 910 TTCCTGTAAAACAT-TACAACATACTGGATCCTCTGAAACACAGCAATAACCTTGGACGT 968
||||| | |||||| | ||||||| | |||||||| ||| ||||||| ||||| || |
Sbjct 1230 TTCCTATCAAACATCT-CAACATAGTTGATCCTCTAAAATACAGCAACAACCTCGG-CAA 1287
Query 969 A-GTGTGT-CAGAAGGAAATG-CGATACGTTTAAGACATTG-TTTTAGAAGGGGAGCTCA 1024
| |||| | || ||||||||| | | ||| |||||||| | ||||| | |||||||
Sbjct 1288 AAGTGT-TACACAAGGAAATGTCCA-ACGAATAAGACAT-GCTTTTACACTTGGAGCTC- 1343
Query 1025 GAA-GCTCAGAGATGTGCTTACACTACCTGGAGAGACCGTGGGTTGGAAACTGGAGAACT 1083
||| ||| |||||||| ||| |||||||||| || ||| |||| |||| | ||||||| |
Sbjct 1344 GAAAGCTAAGAGATGTTCTTTCACTACCTGGTGACACCATGGGATGGAGATTGGAGAAGT 1403
Query 1084 TCTTTGGTAATTCACTGGACAGGAACGGTAAGGGACAAAGACAAGACGTAGAG-GAGCCT 1142
||||| |||| || |||| || || |||||||||||||| ||||| || || || ||
Sbjct 1404 TCTTTCGTAACTCTTTGGAGAGAAATGGTAAGGGACAAAGGCAAGATGT-GAATGATCCC 1462
Query 1143 GTCA-TCCCGTTT-GGCACTGGAAAAGCAGA-TTACTCT-AATCTTAGAGGAGATTT 1195
|| | | | ||| || ||||||| | |||| ||| ||| || ||||| ||||||||
Sbjct 1463 GTTACTGC--TTTCGGTACTGGAAGATCAGAATTA-TCTGAA-CTTAGTGGAGATTT 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78714454560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5