BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934862
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40560.1 | Symbols: | Protein kinase superfamily protein | ... 1051 0.0
AT2G40500.1 | Symbols: | Protein kinase superfamily protein | ... 773 0.0
> AT2G40560.1 | Symbols: | Protein kinase superfamily protein
| chr2:16938705-16939616 REVERSE LENGTH=912
Length=912
Score = 1051 bits (569), Expect = 0.0
Identities = 810/923 (88%), Gaps = 30/923 (3%)
Strand=Plus/Plus
Query 20 GATGGAGCAACTTTGGAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGTCGAAGGT 79
|||||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 6 GATGGAACAAATTTGCAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGACGAAGCT 65
Query 80 CTCTTCTCTTGGCGGAGGCAGCTTCGGTCGCGTCTCTCTCGAGAAGGACTCTAACTCCGG 139
||||||||||||| |||| | ||||||| ||||||||||||||||||||| |||| |
Sbjct 66 CTCTTCTCTTGGCCGAGGGAACTTCGGTTACGTCTCTCTCGAGAAGGACTCCAACT-C-- 122
Query 140 CCGACTCTACGCAAAGAAGTCATCGCGGATGCATCTCCAAAAGATTCTCGAGAAGGAGCT 199
|||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 123 CCGACTTTACGCAAAGAAGTCATCGCCGATGCATCTCAAAAAGATTCTCGAGAAGGAGCT 182
Query 200 CAGGATCATGCATCGTTTCCGCAATCATCCTCGCATCGTCCAAGCTTCAAACAAGCTTCA 259
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 183 CAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTCCAAGCCTCAAACAAGCTTCA 242
Query 260 CTTTCAAA-CAAAACCCTATGAATATTGCAACATTTTTATGGAGTACGCCTCCAAAGGTA 318
||| |||| | || ||||| ||||||||| |||| | |||||||||||||||||||||||
Sbjct 243 CTTACAAATCCAA-CCCTACGAATATTGCTACATCTATATGGAGTACGCCTCCAAAGGTA 301
Query 319 ATCTCTATAAGATTT-TATCTGGTTTCCC-CGACAAATCACAGCCCATACCAGAGTCTTT 376
||||| ||| | ||| ||| |||||||| || ||| | |||| ||||| ||||||||
Sbjct 302 ATCTCCATAGG-TTTATATATGGTTTCCGTCGG-AAAGAAGAGCCGATACCTGAGTCTTT 359
Query 377 GGTCAGTCGCGCGGCTCGTATGATCCTAGAAGGACTCGTGGCTCTTCACTCCCATGGTTA 436
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 GGTCAGTCGCACGGCTCGTATGATCCTAGAAGGACTCGAGGCTCTTCACTCCCATGGTTA 419
Query 437 CGTTCACTGCGACCTCAAGCCATCCAACGTTCTCGTCTTCCCTTCCACAACTCCTGGAGA 496
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 CGTTTACTGCGACCTCAAGCCATCCAACGTTCTCCTCTTCCCTTCCACAACTCCTGGAGA 479
Query 497 GCCGTGGGATCTCAAGCTTGCTGATTTCGGATCATCCAAGGAACCTGATTCTGAAT-ATG 555
|||||||||||||||||||||||||||||| |||||||| || ||||| | || | |||
Sbjct 480 GCCGTGGGATCTCAAGCTTGCTGATTTCGGTTCATCCAAAGAGCCTGACACCGA-TCATG 538
Query 556 ATTTTATGTCCCTTGGTACGGCTCAGTACATACCATCAGAGTCTTTTGGT-CCAAACGGA 614
|| || |||||||||||| | | ||||||| || | || ||||||| | |||||||||
Sbjct 539 ATCCTACGTCCCTTGGTACTGTTGAGTACATGCCCCCGGACTCTTTTG-TACCAAACGGA 597
Query 615 CTGATCAATCCGGGACATATCGATCC-GCGCCTTGATATATATGCTCTAGGGTGTGTGGT 673
|||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||
Sbjct 598 CTGATCGATCCGGGACATATCGATCCAGC-CCTTGATATATATTCTCTAGGGTGTGTGGT 656
Query 674 TTATGAGATGTTTGGAGCTTTACCTAAGCAGGAGTACTTTGAATA-TTATTACG-ATTGG 731
| ||||||||||||||||| |||||| |||||||||||||| | || ||||| || ||
Sbjct 657 TAATGAGATGTTTGGAGCTATACCTATCCAGGAGTACTTTGACGAATT-TTACGTAT-GG 714
Query 732 -ATATTGCATCGA-GAAATCTCTCCAG-AGGCTCAAGATTTCTTGAGGCGGTGCCATGAC 788
|| |||| | || | |||||||| | |||||||||||||||| ||||| ||| |||||
Sbjct 715 CAT-TTGCGT-GACGTTATCTCTCC-GCAGGCTCAAGATTTCTTAAGGCGATGCGATGAC 771
Query 789 ATGCATCCACACAGGCCCACCGCGACACAGCTCTTGAACCATTCTTTCATTACGCAGAG- 847
|||| | ||| ||||||||||||||| |||||||||| ||| |||| ||||| || ||
Sbjct 772 ATGCGTTCACGCAGGCCCACCGCGACTGAGCTCTTGAAACATCCTTTTATTACACA-AGG 830
Query 848 ACTTCCATCGCCAACCAGAGAAGACGACAAGGAGATATCAGCTAGGTCGTTGATTACAAG 907
||||||||||||||| | ||||||| ||||||||||||| ||||||||||||| ||||
Sbjct 831 ACTTCCATCGCCAACAACAGAAGACAACAAGGAGATATC---TAGGTCGTTGATTCCAAG 887
Query 908 TGTCTCCAAGCTTCTTTTGACCT 930
| |||| ||||||||||||||||
Sbjct 888 TTTCTCGAAGCTTCTTTTGACCT 910
> AT2G40500.1 | Symbols: | Protein kinase superfamily protein
| chr2:16916330-16917217 FORWARD LENGTH=888
Length=888
Score = 773 bits (418), Expect = 0.0
Identities = 771/931 (83%), Gaps = 66/931 (7%)
Strand=Plus/Plus
Query 21 ATGGAGCAACTTTGG-AGAGATGATG-ATTGGATTGTGGACGAGTCTTCGTTGTCGAAGG 78
|||||| ||| |||| |||||||||| ||| ||||||||||||||||||| | | |||
Sbjct 1 ATGGAGAAAC-TTGGCAGAGATGATGAATT-GATTGTGGACGAGTCTTCG-T-T-GAA-A 54
Query 79 T-C-TCT-TC-TCTTGGCGGAGGCAGCTTCGGTCGCGTCTCTCTCGA-GAAGGACTCTAA 133
| | ||| || |||| || ||| | |||| || ||||| |||| | ||||||||| ||
Sbjct 55 TCCTTCTCTCTTCTTTGCCAAGGTAACTTCAGTTACGTCTGTCTC-ATGAAGGACTCCAA 113
Query 134 CTCCGGCCGAC-TCTACGCAAAGAAGTCATCGCGGATGCATCTCCAAA-AGATTCTCGAG 191
| | |||| | | ||||||||||||||||| |||||| | |||| |||||||||||
Sbjct 114 AT-C--TCGACGT-TGCGCAAAGAAGTCATCGCCGATGCAGC-ACAAACAGATTCTCGAG 168
Query 192 AAGGAGCTCAGGATCATGCATCGTTTCCGCAATCATCCTCGCATCGTCCAAGCTTCAAAC 251
||||| ||| ||||||||||||||||||| | |||| ||||||||||||||| ||||||
Sbjct 169 AAGGAACTCCGGATCATGCATCGTTTCCGTGACCATCATCGCATCGTCCAAGCCTCAAAC 228
Query 252 AAGCTTCACTTTCAAA-CAAAACCCTATGAATATTGCAACATTTTTATGGAGTACGCCTC 310
||| ||||| | |||| | ||||||| || | | ||| |||| | |||||||||||| ||
Sbjct 229 AAGTTTCACATACAAATC-AAACCCTCTG-A-A-TGCTACATCTATATGGAGTACGCGTC 284
Query 311 CAAAGGTAATCTCTATAAGATTT-TATCTGGTTT-CCCCGACAAATCACAGCCCATACCA 368
| ||||||||||| ||||| ||| |||||||||| || ||||| | | |||||
Sbjct 285 CGAAGGTAATCTCCATAAG-TTTATATCTGGTTTGGAAGGA-AAATC-C-G----TACCA 336
Query 369 GAGTCTTTGGT-CAGTCGCGCGGCTCGTATGATCCTAGAAGGACTCGTGGCTCTTCACTC 427
||||||||||| || ||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 337 GAGTCTTTGGTCCA-ACGCACGGCTCGTATGATCCTAGAAGGACTTGAGGCTCTTCACTC 395
Query 428 CCATGGTTACGTTCACTGCGACCTCAAGCCATCCAACGTTCTCGTCTTCCCTTCCACA-A 486
||||||||||||||||||| | |||| |||||||||||||||| ||||||| |||| | |
Sbjct 396 CCATGGTTACGTTCACTGCAATCTCAGGCCATCCAACGTTCTCCTCTTCCCGTCCA-AGA 454
Query 487 CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGATCATCCAAGGAACCTGATT 546
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 455 CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGCTCATCCAAGGAACCTGATT 514
Query 547 CTGAATATGATTTTATGTCCCTTGGTAC-G-G-CTCAGTACATACC-ATCAGAGTCTTTT 602
| || |||| || |||| | ||||||| | | || ||||||| || || ||||||||||
Sbjct 515 CCGATTATGGTTGGATGTACTTTGGTACGGCGCCTAAGTACATGCCAAT-AGAGTCTTTT 573
Query 603 GGTCCAAACGGACTGATCAATCCGGGACATATCGATCCGCGCCTTGATATATATGCTCTA 662
|| || || ||| | | || | ||||||||| ||||||||||||||||||||
Sbjct 574 GGGCCTAAGGGA--G-T-GAT------C--ATCGATCCGAGCCTTGATATATATGCTCTA 621
Query 663 GGGTGTGTGGTTTATGAGATGTTTGGAGCTTTACCTAAGCAGGAGTACTTTGAATATTAT 722
||||||||||||||||||||| |||||||| |||||| ||||| |||||||| | |||
Sbjct 622 GGGTGTGTGGTTTATGAGATGCTTGGAGCTATACCTATCCAGGACTACTTTGACGAATAT 681
Query 723 TACGATTGGATAT-TGCATCGAGAAATCTCTCCAGAGGCTCA-AGATTTCTTGAGGCGGT 780
||||| |||| || ||| ||| | |||||||| |||||| | ||||||||| || ||||
Sbjct 682 TACGAATGGA-ATCTGCGTCGTCATATCTCTCCGGAGGCT-AGAGATTTCTTAAGCCGGT 739
Query 781 GCCA-TGACATGCATCCACACAGGCCCACCGCGACACAGCTCTTGAACCATTCTTTCATT 839
|| | | |||||||||||||||||||||||||| || | |||||||||||| ||||||||
Sbjct 740 GC-AGTAACATGCATCCACACAGGCCCACCGCGGCATATCTCTTGAACCATCCTTTCATT 798
Query 840 ACGCAGAGACTTCCATCGCCAACCAGAGAAGACGACAAGGAGATATCAGCTAGGTCGTTG 899
|| || | ||||||||||||||| | ||||||| ||||||||||||| ||||||||||
Sbjct 799 ACTCAAATACTTCCATCGCCAACAACAGAAGACAACAAGGAGATATC---TAGGTCGTTG 855
Query 900 ATTACAAGTGTCTCCAAGCTTCTTTTGACCT 930
||| ||||| |||| |||||||||||| |||
Sbjct 856 ATTCCAAGTTTCTCGAAGCTTCTTTTGGCCT 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46567054269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5