BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg934866 Length=976 Score E Sequences producing significant alignments: (Bits) Value AT2G40500.1 | Symbols: | Protein kinase superfamily protein | ... 752 0.0 AT2G40560.1 | Symbols: | Protein kinase superfamily protein | ... 725 0.0 > AT2G40500.1 | Symbols: | Protein kinase superfamily protein | chr2:16916330-16917217 FORWARD LENGTH=888 Length=888 Score = 752 bits (407), Expect = 0.0 Identities = 571/649 (88%), Gaps = 16/649 (2%) Strand=Plus/Plus Query 305 ACCCTCTGAATGCTTCATCTATATGGAGTACGCGTCCAAAGGTAATCTCAATAAGTTTAT 364 |||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 249 ACCCTCTGAATGCTACATCTATATGGAGTACGCGTCCGAAGGTAATCTCCATAAGTTTAT 308 Query 365 ATATGGTTTCCGCAGGAAAGAACAAAAGATACCTGAGACTTTGGT-CAGTCGCACGGCTC 423 || |||||| | |||||| | | | |||| ||| ||||||| || |||||||||| Sbjct 309 ATCTGGTTT-GGAAGGAAA-ATC---CG-TACCAGAGTCTTTGGTCCA-ACGCACGGCTC 361 Query 424 GTATGATCCTAGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTCACTGCAATCTCA 483 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 362 GTATGATCCTAGAAGGACTTGAGGCTCTTCACTCCCATGGTTACGTTCACTGCAATCTCA 421 Query 484 AACCATCCAACGTTCTCCTCTTCCCTTCCAAAACCCCTGGAGAGCCGTGGGATCTTAAGC 543 ||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||| Sbjct 422 GGCCATCCAACGTTCTCCTCTTCCCGTCCAAGACTCCTGGAGAGCCGTGGGATCTCAAGC 481 Query 544 TTGCTGACTTCGGTTCATCCAAGGAGCCTAATACCGATTATGATTCTAAGTACCTTGGTA 603 ||||||| ||||| ||||||||||| ||| || ||||||||| || | |||| |||||| Sbjct 482 TTGCTGATTTCGGCTCATCCAAGGAACCTGATTCCGATTATGGTTGGATGTACTTTGGTA 541 Query 604 C-G-G-CTAAGTACATGCCAGCAGAGTCTTTTCCGCCAAACGGACTGATCATCGATCCGG 660 | | | |||||||||||||| |||||||||| ||| || ||| |||||||||||||| Sbjct 542 CGGCGCCTAAGTACATGCCAATAGAGTCTTTTGGGCCTAAGGGAGTGATCATCGATCCGA 601 Query 661 GCCTTGATATATATGCTCTAGGGTGTGTGGTTTATGAGATGCTTGGAGCTATAGCTCTCG 720 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 602 GCCTTGATATATATGCTCTAGGGTGTGTGGTTTATGAGATGCTTGGAGCTATACCTATCC 661 Query 721 AGGAGTACTTTGAAGAATTTTACGAGTGGCATTTGCGTCGAGTTATCTCTCCGGAGGCTA 780 |||| |||||||| |||| |||||| ||| || ||||||| ||||||||||||||||| Sbjct 662 AGGACTACTTTGACGAATATTACGAATGGAATCTGCGTCGTCATATCTCTCCGGAGGCTA 721 Query 781 GAGATTTCTTGAGGCGGTGCCAGGA-CATACATTCACGCAGGCCCACCGCGGCAGAGCTC 839 |||||||||| || |||||| || | ||| ||| ||| |||||||||||||||| | ||| Sbjct 722 GAGATTTCTTAAGCCGGTGC-AGTAACATGCATCCACACAGGCCCACCGCGGCATATCTC 780 Query 840 TTGAACCATCCTTTCATTACACAAGAACTACTTCCATCGCCAACCACCGAAGACAACAAG 899 |||||||||||||||||||| ||| | |||||||||||||||| || |||||||||||| Sbjct 781 TTGAACCATCCTTTCATTACTCAA-A--TACTTCCATCGCCAACAACAGAAGACAACAAG 837 Query 900 GAGATATCTAGGTCGTTGATTCCAGGTGTCTCGAAGCTTCTTTTGACCT 948 |||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct 838 GAGATATCTAGGTCGTTGATTCCAAGTTTCTCGAAGCTTCTTTTGGCCT 886 > AT2G40560.1 | Symbols: | Protein kinase superfamily protein | chr2:16938705-16939616 REVERSE LENGTH=912 Length=912 Score = 725 bits (392), Expect = 0.0 Identities = 568/650 (87%), Gaps = 23/650 (4%) Strand=Plus/Plus Query 315 TGCTTCATCTATATGGAGTACGCGTCCAAAGGTAATCTCAATAAGTTTATATATGGTTTC 374 |||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| Sbjct 268 TGCTACATCTATATGGAGTACGCCTCCAAAGGTAATCTCCATAGGTTTATATATGGTTTC 327 Query 375 CG-CAGGAAAGAACAAAAGATACCTGAGACTTTGGTCAGTCGCACGGCTCGTATGATCCT 433 || | |||||||| | |||||||||| ||||||||||||||||||||||||||||||| Sbjct 328 CGTC-GGAAAGAAGAGCCGATACCTGAGTCTTTGGTCAGTCGCACGGCTCGTATGATCCT 386 Query 434 AGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTCACTGCAATCTCAAACCATCCAA 493 ||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||| Sbjct 387 AGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTTACTGCGACCTCAAGCCATCCAA 446 Query 494 CGTTCTCCTCTTCCCTTCCAAAACCCCTGGAGAGCCGTGGGATCTTAAGCTTGCTGACTT 553 |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| || Sbjct 447 CGTTCTCCTCTTCCCTTCCACAACTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTT 506 Query 554 CGGTTCATCCAAGGAGCCTAATACCGATTATGATTCTAAGTACCTTGGTACGGCTAAGTA 613 |||||||||||| |||||| | |||||| ||||| ||| || ||||||||| | | |||| Sbjct 507 CGGTTCATCCAAAGAGCCTGACACCGATCATGATCCTACGTCCCTTGGTACTGTTGAGTA 566 Query 614 CATGCCAGCAGAGTCTTTTCCGCCAAACGGACTGATC-ATC-G--A--TC-CGG----GC 662 |||||| | || |||||| ||||||||||||||| ||| | | | || || Sbjct 567 CATGCCCCCGGACTCTTTTGTACCAAACGGACTGATCGATCCGGGACATATCGATCCAGC 626 Query 663 C-TTGATATATATGCTCTAGGGTGTGTGGTTTATGAGATGCTTGGAGCTATAGCTCTCGA 721 | ||||||||||| ||||||||||||||||| |||||||| ||||||||||| || || | Sbjct 627 CCTTGATATATATTCTCTAGGGTGTGTGGTTAATGAGATGTTTGGAGCTATACCTATCCA 686 Query 722 GGAGTACTTTGAAGAATTTTACG-AGTGGCATTTGCGTCGA-GTTATCTCTCCGGAGGCT 779 |||||||||||| |||||||||| | |||||||||||| || |||||||||||| ||||| Sbjct 687 GGAGTACTTTGACGAATTTTACGTA-TGGCATTTGCGT-GACGTTATCTCTCCGCAGGCT 744 Query 780 -AGAGATTTCTTGAGGCGGTGCCAGGACATACATTCACGCAGGCCCACCGCGGCAGAGCT 838 | ||||||||| ||||| ||| | ||||| | ||||||||||||||||||| | ||||| Sbjct 745 CA-AGATTTCTTAAGGCGATGCGATGACATGCGTTCACGCAGGCCCACCGCGACTGAGCT 803 Query 839 CTTGAACCATCCTTTCATTACACAAGAACTACTTCCATCGCCAACCACCGAAGACAACAA 898 |||||| |||||||| |||||||||| ||| | ||||||||||| || ||||||||||| Sbjct 804 CTTGAAACATCCTTTTATTACACAAGGACT--T-CCATCGCCAACAACAGAAGACAACAA 860 Query 899 GGAGATATCTAGGTCGTTGATTCCAGGTGTCTCGAAGCTTCTTTTGACCT 948 ||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 861 GGAGATATCTAGGTCGTTGATTCCAAGTTTCTCGAAGCTTCTTTTGACCT 910 Score = 294 bits (159), Expect = 9e-79 Identities = 222/251 (88%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 20 GATGG-AGAAACTTTGCAAAGATGATGATTGGATTGAGGACGAGTCTTCATTGAC-AACC 77 ||||| | ||| |||||| ||||||||||||||||| |||||||||||| ||||| || Sbjct 6 GATGGAACAAA-TTTGCAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGACGAA-G 63 Query 78 CTATCTCTTCT-TT-GCCAAGGCAACTTCAGTTACGTGTGTCTCAAGGAGGACTCCAAAT 135 | |||||||| || ||| ||| |||||| ||||||| | |||| || |||||||||| | Sbjct 64 C--TCTCTTCTCTTGGCCGAGGGAACTTCGGTTACGTCTCTCTCGAGAAGGACTCCAACT 121 Query 136 CTCGACTTTGCGCAAAGAAGGCATCGCCGATGCATCACAAAAAGATTCTCGAGAAGGAGC 195 | ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 122 CCCGACTTTACGCAAAGAAGTCATCGCCGATGCATCTCAAAAAGATTCTCGAGAAGGAGC 181 Query 196 TCAGGATCATGCATCGTTTCCGTGACCACCCTCGCATCGTCCAAGCCTCAAACAAGCTTC 255 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 182 TCAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTCCAAGCCTCAAACAAGCTTC 241 Query 256 ACCTTCACAAA 266 || || ||||| Sbjct 242 AC-TT-ACAAA 250 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47772673797 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5