BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934866
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40500.1 | Symbols: | Protein kinase superfamily protein | ... 752 0.0
AT2G40560.1 | Symbols: | Protein kinase superfamily protein | ... 725 0.0
> AT2G40500.1 | Symbols: | Protein kinase superfamily protein
| chr2:16916330-16917217 FORWARD LENGTH=888
Length=888
Score = 752 bits (407), Expect = 0.0
Identities = 571/649 (88%), Gaps = 16/649 (2%)
Strand=Plus/Plus
Query 305 ACCCTCTGAATGCTTCATCTATATGGAGTACGCGTCCAAAGGTAATCTCAATAAGTTTAT 364
|||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 249 ACCCTCTGAATGCTACATCTATATGGAGTACGCGTCCGAAGGTAATCTCCATAAGTTTAT 308
Query 365 ATATGGTTTCCGCAGGAAAGAACAAAAGATACCTGAGACTTTGGT-CAGTCGCACGGCTC 423
|| |||||| | |||||| | | | |||| ||| ||||||| || ||||||||||
Sbjct 309 ATCTGGTTT-GGAAGGAAA-ATC---CG-TACCAGAGTCTTTGGTCCA-ACGCACGGCTC 361
Query 424 GTATGATCCTAGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTCACTGCAATCTCA 483
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GTATGATCCTAGAAGGACTTGAGGCTCTTCACTCCCATGGTTACGTTCACTGCAATCTCA 421
Query 484 AACCATCCAACGTTCTCCTCTTCCCTTCCAAAACCCCTGGAGAGCCGTGGGATCTTAAGC 543
||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||
Sbjct 422 GGCCATCCAACGTTCTCCTCTTCCCGTCCAAGACTCCTGGAGAGCCGTGGGATCTCAAGC 481
Query 544 TTGCTGACTTCGGTTCATCCAAGGAGCCTAATACCGATTATGATTCTAAGTACCTTGGTA 603
||||||| ||||| ||||||||||| ||| || ||||||||| || | |||| ||||||
Sbjct 482 TTGCTGATTTCGGCTCATCCAAGGAACCTGATTCCGATTATGGTTGGATGTACTTTGGTA 541
Query 604 C-G-G-CTAAGTACATGCCAGCAGAGTCTTTTCCGCCAAACGGACTGATCATCGATCCGG 660
| | | |||||||||||||| |||||||||| ||| || ||| ||||||||||||||
Sbjct 542 CGGCGCCTAAGTACATGCCAATAGAGTCTTTTGGGCCTAAGGGAGTGATCATCGATCCGA 601
Query 661 GCCTTGATATATATGCTCTAGGGTGTGTGGTTTATGAGATGCTTGGAGCTATAGCTCTCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 602 GCCTTGATATATATGCTCTAGGGTGTGTGGTTTATGAGATGCTTGGAGCTATACCTATCC 661
Query 721 AGGAGTACTTTGAAGAATTTTACGAGTGGCATTTGCGTCGAGTTATCTCTCCGGAGGCTA 780
|||| |||||||| |||| |||||| ||| || ||||||| |||||||||||||||||
Sbjct 662 AGGACTACTTTGACGAATATTACGAATGGAATCTGCGTCGTCATATCTCTCCGGAGGCTA 721
Query 781 GAGATTTCTTGAGGCGGTGCCAGGA-CATACATTCACGCAGGCCCACCGCGGCAGAGCTC 839
|||||||||| || |||||| || | ||| ||| ||| |||||||||||||||| | |||
Sbjct 722 GAGATTTCTTAAGCCGGTGC-AGTAACATGCATCCACACAGGCCCACCGCGGCATATCTC 780
Query 840 TTGAACCATCCTTTCATTACACAAGAACTACTTCCATCGCCAACCACCGAAGACAACAAG 899
|||||||||||||||||||| ||| | |||||||||||||||| || ||||||||||||
Sbjct 781 TTGAACCATCCTTTCATTACTCAA-A--TACTTCCATCGCCAACAACAGAAGACAACAAG 837
Query 900 GAGATATCTAGGTCGTTGATTCCAGGTGTCTCGAAGCTTCTTTTGACCT 948
|||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 838 GAGATATCTAGGTCGTTGATTCCAAGTTTCTCGAAGCTTCTTTTGGCCT 886
> AT2G40560.1 | Symbols: | Protein kinase superfamily protein
| chr2:16938705-16939616 REVERSE LENGTH=912
Length=912
Score = 725 bits (392), Expect = 0.0
Identities = 568/650 (87%), Gaps = 23/650 (4%)
Strand=Plus/Plus
Query 315 TGCTTCATCTATATGGAGTACGCGTCCAAAGGTAATCTCAATAAGTTTATATATGGTTTC 374
|||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 268 TGCTACATCTATATGGAGTACGCCTCCAAAGGTAATCTCCATAGGTTTATATATGGTTTC 327
Query 375 CG-CAGGAAAGAACAAAAGATACCTGAGACTTTGGTCAGTCGCACGGCTCGTATGATCCT 433
|| | |||||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct 328 CGTC-GGAAAGAAGAGCCGATACCTGAGTCTTTGGTCAGTCGCACGGCTCGTATGATCCT 386
Query 434 AGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTCACTGCAATCTCAAACCATCCAA 493
||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||
Sbjct 387 AGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTTACTGCGACCTCAAGCCATCCAA 446
Query 494 CGTTCTCCTCTTCCCTTCCAAAACCCCTGGAGAGCCGTGGGATCTTAAGCTTGCTGACTT 553
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| ||
Sbjct 447 CGTTCTCCTCTTCCCTTCCACAACTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTT 506
Query 554 CGGTTCATCCAAGGAGCCTAATACCGATTATGATTCTAAGTACCTTGGTACGGCTAAGTA 613
|||||||||||| |||||| | |||||| ||||| ||| || ||||||||| | | ||||
Sbjct 507 CGGTTCATCCAAAGAGCCTGACACCGATCATGATCCTACGTCCCTTGGTACTGTTGAGTA 566
Query 614 CATGCCAGCAGAGTCTTTTCCGCCAAACGGACTGATC-ATC-G--A--TC-CGG----GC 662
|||||| | || |||||| ||||||||||||||| ||| | | | || ||
Sbjct 567 CATGCCCCCGGACTCTTTTGTACCAAACGGACTGATCGATCCGGGACATATCGATCCAGC 626
Query 663 C-TTGATATATATGCTCTAGGGTGTGTGGTTTATGAGATGCTTGGAGCTATAGCTCTCGA 721
| ||||||||||| ||||||||||||||||| |||||||| ||||||||||| || || |
Sbjct 627 CCTTGATATATATTCTCTAGGGTGTGTGGTTAATGAGATGTTTGGAGCTATACCTATCCA 686
Query 722 GGAGTACTTTGAAGAATTTTACG-AGTGGCATTTGCGTCGA-GTTATCTCTCCGGAGGCT 779
|||||||||||| |||||||||| | |||||||||||| || |||||||||||| |||||
Sbjct 687 GGAGTACTTTGACGAATTTTACGTA-TGGCATTTGCGT-GACGTTATCTCTCCGCAGGCT 744
Query 780 -AGAGATTTCTTGAGGCGGTGCCAGGACATACATTCACGCAGGCCCACCGCGGCAGAGCT 838
| ||||||||| ||||| ||| | ||||| | ||||||||||||||||||| | |||||
Sbjct 745 CA-AGATTTCTTAAGGCGATGCGATGACATGCGTTCACGCAGGCCCACCGCGACTGAGCT 803
Query 839 CTTGAACCATCCTTTCATTACACAAGAACTACTTCCATCGCCAACCACCGAAGACAACAA 898
|||||| |||||||| |||||||||| ||| | ||||||||||| || |||||||||||
Sbjct 804 CTTGAAACATCCTTTTATTACACAAGGACT--T-CCATCGCCAACAACAGAAGACAACAA 860
Query 899 GGAGATATCTAGGTCGTTGATTCCAGGTGTCTCGAAGCTTCTTTTGACCT 948
||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 861 GGAGATATCTAGGTCGTTGATTCCAAGTTTCTCGAAGCTTCTTTTGACCT 910
Score = 294 bits (159), Expect = 9e-79
Identities = 222/251 (88%), Gaps = 10/251 (4%)
Strand=Plus/Plus
Query 20 GATGG-AGAAACTTTGCAAAGATGATGATTGGATTGAGGACGAGTCTTCATTGAC-AACC 77
||||| | ||| |||||| ||||||||||||||||| |||||||||||| ||||| ||
Sbjct 6 GATGGAACAAA-TTTGCAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGACGAA-G 63
Query 78 CTATCTCTTCT-TT-GCCAAGGCAACTTCAGTTACGTGTGTCTCAAGGAGGACTCCAAAT 135
| |||||||| || ||| ||| |||||| ||||||| | |||| || |||||||||| |
Sbjct 64 C--TCTCTTCTCTTGGCCGAGGGAACTTCGGTTACGTCTCTCTCGAGAAGGACTCCAACT 121
Query 136 CTCGACTTTGCGCAAAGAAGGCATCGCCGATGCATCACAAAAAGATTCTCGAGAAGGAGC 195
| ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 122 CCCGACTTTACGCAAAGAAGTCATCGCCGATGCATCTCAAAAAGATTCTCGAGAAGGAGC 181
Query 196 TCAGGATCATGCATCGTTTCCGTGACCACCCTCGCATCGTCCAAGCCTCAAACAAGCTTC 255
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 182 TCAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTCCAAGCCTCAAACAAGCTTC 241
Query 256 ACCTTCACAAA 266
|| || |||||
Sbjct 242 AC-TT-ACAAA 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5