BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934868

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40600.1 | Symbols:  | appr-1-p processing enzyme family pro...   372    3e-102


> AT2G40600.1 | Symbols:  | appr-1-p processing enzyme family protein 
| chr2:16946870-16948561 REVERSE LENGTH=940
Length=940

 Score =  372 bits (201),  Expect = 3e-102
 Identities = 407/505 (81%), Gaps = 20/505 (4%)
 Strand=Plus/Plus

Query  47   TTTCAAGTTGTCTGATTATTGCGTGCTTAAGATCGTTCAAGGCGACATCACAAATTGGTC  106
            |||||| |||||||||| | || | ||||||||| || |||| |||||||| || |||||
Sbjct  243  TTTCAATTTGTCTGATTCTAGCCTTCTTAAGATCCTTAAAGGAGACATCACCAAGTGGTC  302

Query  107  CGTCGATGGC-TCCTCCGATGCTATTGTTAATCCAGCAAATGAGCGTATGTTAGGTGGTA  165
             || |||  | ||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct  303  TGTTGAT-TCTTCCTCCGATGCTATTGTCAATCCAGCAAATGAGCGTATGTTAGGTGGTG  361

Query  166  ATGGTGCAGATGGAGCCATTCAT-GACGCCGCTGGGCCACAGTTGAGAGCAGCATGTTAC  224
             |||||| |||||||| || ||| || || |||||||||||  | ||||| ||||| || 
Sbjct  362  GTGGTGCTGATGGAGCAATACATAGA-GCTGCTGGGCCACAACTCAGAGCTGCATGCTAT  420

Query  225  GAAGTCCCTGAAGTTAGTCCCGGAGTCCGTTGTCCCACCGGAGAATCAAGAATTACGCCG  284
            || || ||||||||| |||| |||||||||||||| || |||||| |||||||||| |||
Sbjct  421  GAGGTTCCTGAAGTTCGTCCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCG  480

Query  285  GGTTTTAACTTGCCTGCATCTCATGTGATTCACACGGTTGGACCCATTTATAA-TGCCGA  343
            |||||||||||||||||||| | |||||||||||| |||||||| || ||| | | | ||
Sbjct  481  GGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTATGACT-CAGA  539

Query  344  -GAAGAATCCT-AAGAAACTC-CTAGAAAGTGCTTACAAGAACAGTCTGAGAGTGGCTAA  400
             |   || ||| ||||| ||| | |  || | | ||||| || ||||||||||| || ||
Sbjct  540  TGTC-AACCCTCAAGAATCTCTC-ACCAATT-CGTACAAAAATAGTCTGAGAGTTGCAAA  596

Query  401  GGAGAATAACATTCGG-TACATAGCATTTACTGCGATATCTTGTGGTATTTTCAGG-TAT  458
            ||| || || || |   ||||| |||||| |||| ||||||||||| |||| | || |||
Sbjct  597  GGAAAACAATAT-CAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTAC-GGATAT  654

Query  459  CCTTTGGAGGAAGCTGCTTCTATAGCTATCTCCACTGTTAAGCAATT-TGGTAAAGA-TT  516
            ||||| || ||||||||| | |||| ||| || ||  | || ||||| |  ||  || ||
Sbjct  655  CCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATTCTC-TACTGACTT  713

Query  517  TGAAAGAGGTGCATTTTGTTATGTT  541
            | |||||||||||||||||| ||||
Sbjct  714  T-AAAGAGGTGCATTTTGTTTTGTT  737



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34058751666


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5