BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934878
Length=4121
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40720.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 4056 0.0
AT3G03360.1 | Symbols: | F-box/RNI-like superfamily protein | ... 658 0.0
AT1G60180.1 | Symbols: | pseudogene of F-box family protein | ... 307 5e-82
> AT2G40720.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:16987269-16989851 FORWARD LENGTH=2583
Length=2583
Score = 4056 bits (2196), Expect = 0.0
Identities = 2458/2586 (95%), Gaps = 12/2586 (0%)
Strand=Plus/Plus
Query 1524 ATGCGTTTCAAGCTTCACGACGTTCACATTCGTCGGCGACTTTCTCGTTTAGCTGATTCT 1583
|||||||||||||||||||||||||||||||||||| |||||| | || |||||||||||
Sbjct 1 ATGCGTTTCAAGCTTCACGACGTTCACATTCGTCGGGGACTTTGTTGTGTAGCTGATTCT 60
Query 1584 TACATTTCTCCGGCATCGGTTAATTCAGGAATCAGAGCACTAATTCAGAAAGGAGAGTAT 1643
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TACATTTCTCCGGCATCGATTAATTCAGGAATCAGAGCTCTAATTCAGAAAGGAGAGTAT 120
Query 1644 TTACAAGCTCTGCATTTATACACTAAGCATGATGGTTCTTCTCCTTTGTGGACTTCCGTT 1703
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CTACAAGCTCTGCATTTATACTCTAAGCATGATGGTTCTTCTCCTTTCTGGACTTCCGTT 180
Query 1704 TTCACATTTCCTTCTCTTCTTAAAGCTTGCTCTTCTCTTACGAATCTCAGCTCTGGCAAA 1763
||||| ||||||||||| |||||||||||||| |||||||||||||||| | ||| |||
Sbjct 181 TTCACGTTTCCTTCTCTACTTAAAGCTTGCTCGGCTCTTACGAATCTCAGTTATGGGAAA 240
Query 1764 ACCATTCATGGTTCGATCATCGTGTTGGGTTGGCGATATGATCCTTTCATCGCAACCTCG 1823
||||||||||||||| || |||||||||| |||||||||||||||||||| |||||||||
Sbjct 241 ACCATTCATGGTTCGGTCGTCGTGTTGGGATGGCGATATGATCCTTTCATTGCAACCTCG 300
Query 1824 CTTGTCAATATGTATGTAAAATGTGGTTTTTTAGATTATGCCGTCCAAGTGTTCGACGGT 1883
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CTTGTTAATATGTATGTAAAATGTGGGTTTTTAGATTATGCCGTCCAAGTGTTCGACGGT 360
Query 1884 TGG--TC----TCAGAGTGGAGTTTCTGCTCGGGATGTCACAGTTTGTAACTCTATGATT 1937
||| || ||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 361 TGGTCTCAGAGTCAGAGTGGAGTTTCTGCTCGGGATGTTACTGTTTGGAACTCTATGATT 420
Query 1938 GATGGGTACTTCAAATTTCGACGATTTAAGGAAGGGGTTGGTTGTTTTCGTCGGATGCTT 1997
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 GATGGGTACTTCAAATTTCGAAGATTTAAGGAAGGGGTTGGTTGTTTTCGTCGGATGCTG 480
Query 1998 GTGTTGGGTGTTAGACCTGATGCTTTCTCGTTATCCATTGTTGTAAGTGTTTTGTGTAAA 2057
||||| ||||| |||||||||||||| || |||||||||||||| |||||| ||||||||
Sbjct 481 GTGTTTGGTGTAAGACCTGATGCTTTTTCCTTATCCATTGTTGTTAGTGTTATGTGTAAA 540
Query 2058 GAAGGAAACTTTAGGCGGGAAGATGGGAAACAGATTCATGGGTATATGTTGAGGAATTCG 2117
||||||||||||||||||||||| ||||||||||||||||| | |||||| |||||||||
Sbjct 541 GAAGGAAACTTTAGGCGGGAAGAAGGGAAACAGATTCATGGATTTATGTTAAGGAATTCG 600
Query 2118 TTAGATGGTGATTCGTTCTTAAAAACTGCTTTGATTGATATGTATTTCAAGTTTGGGTTA 2177
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 601 TTAGATACTGATTCGTTCTTGAAAACTGCTTTGATTGATATGTATTTCAAGTTTGGTTTA 660
Query 2178 TCGACAGATGCGTGGAGAGTTTTTGTGGAGATTGAGGATAAATCGAATGTTGTACTATGG 2237
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCGATAGATGCGTGGAGAGTTTTTGTGGAGATTGAGGATAAATCGAATGTTGTACTATGG 720
Query 2238 AATGTGATGATTGTTGGGTTTGGTGGTAGTGGGATCTGTGAATCTAGCTTGGAGTTGTAT 2297
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 721 AATGTGATGATTGTAGGGTTTGGCGGTAGTGGGATCTGTGAATCTAGCTTGGATTTGTAT 780
Query 2298 ATGCTTGCAAAGAGTAACAGTGTCAAGCTTGTTTCCACTTCATTTACTGGAGCTCTTGGT 2357
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 ATGCTTGCAAAGAATAACAGTGTCAAGCTTGTTTCCACTTCATTCACTGGAGCTCTTGGT 840
Query 2358 GCGTGTAGTCAAAGTGAGAATTCTGGTTTCGGTAGGCAGATCCATTGCGACGTTGTGAAG 2417
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 GCGTGTAGTCAAAGTGAGAATTCTGGTTTCGGTAGGCAGATCCATTGCGACGTGGTGAAG 900
Query 2418 ATGGGACTTGACAATGACCCGTACGTTTCTACTTCTCTGCTGTCAATGTATTCAAAATGC 2477
||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct 901 ATGGGACTTCACAATGACCCGTATGTTTGTACTTCTCTACTGTCAATGTATTCAAAATGT 960
Query 2478 GGTATGGTTGGTGAGGCAGAAACTGTCTTCAGTTGCGTTGTGGATAAAAGACTTGAGATC 2537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGTATGGTTGGTGAGGCAGAAACTGTCTTCAGTTGCGTTGTGGATAAAAGACTTGAGATA 1020
Query 2538 TGGAATGCTATGGTTGCAGCTTACGTAGAGAATGATAATGGGTACTCTGCTTTGGAATTG 2597
||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| |||
Sbjct 1021 TGGAATGCTATGGTTGCAGCTTATGCAGAGAATGATTATGGGTACTCTGCTTTGGATTTG 1080
Query 2598 TTTGGTTTCATGAGACAGAAAAGTGTCTTGCCTGATTCTTTTACCTTGTCGAATGTTATA 2657
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTCGGTTTCATGAGGCAGAAAAGTGTCTTGCCTGATTCTTTTACCTTGTCGAATGTTATA 1140
Query 2658 TCCTGTTGCAGCATGTTTGGATTGTATGACTATGGCAAATCAGTCCACGCGGAACTGTTT 2717
|||||||||||| | || ||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1141 TCCTGTTGCAGCGTATTGGGATTGTATAACTATGGCAAATCAGTCCACGCAGAACTGTTT 1200
Query 2718 AAGAGACCGATACAAAGTACGCCTGCAATAGAGAGTGCTTTACTCACTCTGTACTCCAAA 2777
||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct 1201 AAGAGACCGATACAAAGTACGTCTACAATAGAGAGTGCTTTACTCACTCTGTATTCCAAG 1260
Query 2778 TGTGGATGTGATACTGATGCTTACTTAGTCTTCAAATCAATGGAAGAAAAAGATATGGTT 2837
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGTGGATGTGATCCTGATGCTTACTTAGTCTTCAAATCAATGGAAGAAAAAGATATGGTT 1320
Query 2838 GCGTGGGGCTCCCTGATCTCAGGACTTTGCAAGAATGGGAAATTCAAAGAGGCAT-TGAA 2896
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1321 GCGTGGGGCTCCCTGATCTCAGGACTTTGCAAGAATGGGAAATTCAAAGAGGC-TCTAAA 1379
Query 2897 AGTTTTTGGGGACATGAAAGATGATGATGATAGCTTGAAACCTGATTCCGATATTATGAC 2956
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1380 AGTTTTTGGGGACATGAAAGATGATGATGATAGCTTGAAACCTGATTCTGATATTATGAC 1439
Query 2957 GAGTGTTATAAACGCATGCGCCGGATTAGAGGCTCTCAGTTTTGGCCTTCAGGTTCATGG 3016
||| |||| ||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1440 GAGCGTTACAAACGCATGTGCTGGATTAGAGGCTCTCAGGTTTGGCCTTCAGGTTCATGG 1499
Query 3017 CAGCATGATTAAAACTGGGCTAGTGCTTAATGTTTTTGTTGGCAGCTCCCTTATTGATCT 3076
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1500 CAGCATGATTAAAACTGGGCTAGTGCTGAATGTTTTTGTTGGCAGCTCCCTTATTGATCT 1559
Query 3077 GTATTCTAAGTGTGGCTTACCAGAAATGGCTCTCAAAGTTTTCACTAGCATGAG-ACCGG 3135
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1560 GTATTCTAAGTGTGGCTTACCAGAAATGGCTCTCAAAGTTTTCACTAGCATGAGCAC-GG 1618
Query 3136 AAAACATTGTTGCCTGGAATTCAATGATATCTTGCTACAGCCGAAACAACCTTCCAGAAC 3195
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AAAACATGGTTGCCTGGAATTCAATGATATCTTGCTACAGCCGAAACAACCTTCCAGAAC 1678
Query 3196 TGTCGATTGAACTTTTCAATCTGATGCTCAGTCAAGGTATCTTCCCAGATTCAGTATCCA 3255
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1679 TGTCGATTGACCTTTTCAATCTGATGCTCAGTCAAGGTATCTTCCCTGATTCAGTATCCA 1738
Query 3256 TCACAAGTGTCCTTGTAGCAATCTCATCGACTGCAAGCTTGCTAAAAGGGAAAAGTCTAC 3315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TCACAAGTGTCCTTGTAGCAATCTCATCGACTGCAAGCTTGCTAAAAGGGAAAAGTCTAC 1798
Query 3316 ATGGTTATACATTACGACTTGGCATTCCTTCAGATACTCACCTGAAAAACGCTTTGATTG 3375
|||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1799 ATGGTTATACATTAAGACTCGGCATTCCTTCGGATACTCACCTGAAAAACGCTTTGATTG 1858
Query 3376 ATATGTATGTAAAGTGCGGGTTTTCGAAGTATGCAGAGAATATCTTCAAGAAAATGCAGC 3435
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1859 ATATGTATGTAAAATGCGGGTTTTCGAAGTATGCAGAGAACATCTTCAAGAAAATGCAGC 1918
Query 3436 ATAAGAGCCTGATCACTTGGAACCTAATGATATATGGGTATGGATCCCATGGAGATTGTC 3495
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 ATAAGAGCTTGATCACTTGGAACCTAATGATATATGGGTATGGATCCCATGGAGATTGTA 1978
Query 3496 GTACAGCATTGAGTCTGTTCGATGAGCTGAAAAAGGCAGGAGAAACGCCCGATGATGTAA 3555
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1979 TTACAGCATTGAGTCTGTTCGATGAGATGAAAAAGGCAGGAGAATCGCCCGATGATGTAA 2038
Query 3556 CATTCCTGTCTCTGATTTCAGCCTGCAATCATTCCGGTTTTGTGGAGGAAGGGAAAAACT 3615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 CATTCCTGTCTCTGATTTCAGCCTGCAATCATTCCGGTTTTGTGGAGGAAGGGAAAAACA 2098
Query 3616 TTTTTGAGATCATGAAACAAGATTATGGAATTGAACCAAAAATGGAACATTATGCAAATA 3675
|||||||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 2099 TTTTTGAGTTCATGAAACAAGACTATGGAATCGAACCAAATATGGAACATTATGCAAATA 2158
Query 3676 TGGTGGATCTTCTAGGACGTGCGGGTCGCCTGGAAGAAGCTTACAGTTTTATAAAAGCAA 3735
|||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 2159 TGGTGGATCTTCTAGGACGTGCAGGTCTCCTCGAAGAAGCTTACAGTTTTATAAAAGCAA 2218
Query 3736 TGCCTACTGAAGCAGACAGTAGCATATGGCTCTGCCTCTTATCTGCTTCTAGAACTCATC 3795
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2219 TGCCTATTGAAGCAGACAGTAGCATATGGCTCTGCCTCTTATCTGCTTCAAGAACTCATC 2278
Query 3796 ATAATGTAGAACTTGGAATATTGTCTGCTGAGAAGTTGTTGATAATGGAACCGGAAAGAG 3855
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2279 ATAATGTAGAACTTGGGATATTGTCTGCTGAGAAGTTGTTGAGAATGGAACCGGAAAGAG 2338
Query 3856 GCAGTACCTATGTTCAGCTAATCAATCTTTACATGGAAGCAGGATTGAAGAACGAAGCAG 3915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 GCAGTACCTATGTTCAGCTAATCAATCTTTACATGGAAGCAGGATTGAAGAACGAAGCAG 2398
Query 3916 CAAAGCTGTTGGGTGAGATGAAGGAGAGAGGCTTGCAGAAACAACCTGGTTGCAGTTGGA 3975
|||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 2399 CAAAGCTGTTGGGTCTGATGAAGGAGAAAGGCTTGCATAAACAACCTGGTTGCAGTTGGA 2458
Query 3976 TTGAAGTTAGCGATATATCTAATGTTTTCTTTTCAGGAGGTTCATCTTCTCCAATAAAGG 4035
||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2459 TTGAAGTTAGCGATAGAACTAATGTTTTCTTTTCAGGAGGTTCATCTTCTCCAATGAAGG 2518
Query 4036 CTGAGATCTTCAAAGTATTGAATAGGCTGAAGAGTAATATGGTA-ACTGAGGACAAGCCT 4094
||||||| ||||| |||||||||||| | ||||||||||||||| | |||||||||| |
Sbjct 2519 CTGAGATATTCAACGTATTGAATAGGTTAAAGAGTAATATGGTAGA-TGAGGACAAGGCA 2577
Query 4095 ACTTGA 4100
||||||
Sbjct 2578 ACTTGA 2583
> AT3G03360.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:794906-797013 FORWARD LENGTH=1732
Length=1732
Score = 658 bits (356), Expect = 0.0
Identities = 1027/1332 (77%), Gaps = 122/1332 (9%)
Strand=Plus/Plus
Query 154 TGCCTGATG-TGATCCTCCAAGTTATCCTCTCCTTA-ATTCCGACCAGATTCGCCATCAG 211
||||||||| | || |||||| | || |||||| || |||| |||||||| || ||||
Sbjct 316 TGCCTGATGAT-ATTCTCCAACTAATTCTCTCC-TATCTTCCAACCAGATTGGCGATCAA 373
Query 212 GACTTCCGTCTTGTCCAGACGATGGAGGCATGTATGGTCCTATATACCT--TCTCTCTAC 269
|||||||| || ||||| ||||||||||||||||||| || |||| | || |||| |
Sbjct 374 AACTTCCGTTTTATCCAGGCGATGGAGGCATGTATGGT-CT-GATACATGGTCCCTCTCC 431
Query 270 TTCCATAAGGACAGACCGGATGCTAATTCG-ATAAACGA-AACCCTAGCTCGCTACAAGG 327
||||||| |||||||||||||||| || | || ||| | || ||||| |||||||| ||
Sbjct 432 TTCCATAGGGACAGACCGGATGCTCCTT-GTATTAAC-AGAATCCTAGATCGCTACAGGG 489
Query 328 CTCCGAAGATGATGAGTTTCCGTATCTGTAC------CAGTG-AG-C----T---C-GA- 370
|||| |||||||||||||| ||||||||| | ||| | || | | | ||
Sbjct 490 CTCCCAAGATGATGAGTTTTCGTATCTGTTCTTGTTGCAGGGCAGCCTGTATCAGCAGAC 549
Query 371 --TA-A-TCTTCCTAACATGGACAGTTGGATCAAGTTCGCTTTGTCCAGAAACGTGGAGA 426
| | | | || |||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct 550 CCGACACGCATGCTGACATCGACAGTTGGATCAACTTCGCCATGTCCCGAAACGTGGAGA 609
Query 427 ATCTGTCGCTGTATTTGGAGCGGAGGAGTGACTATAATATCCCTGAATTCCTCTACGTCA 486
||||||| |||||| | || ||||| | | ||| |||||||||||||||| ||| |||
Sbjct 610 ATCTGTCCCTGTATCTCGA--TGAGGA-TAAATATGATATCCCTGAATTCCTTTACATCA 666
Query 487 ATTCCTCTGTCAAG-AATCTCTGCATTGA-----G-T-C---AA-TATTCTAT-TCTAAT 533
|||||||| ||||| || |||| | |||| | | | || ||| ||| ||| |
Sbjct 667 ATTCCTCTCTCAAGCAA-CTCTACCTTGATTTCGGCTGCAAAAAGGATTTTATATCT-CT 724
Query 534 ATAATTCCCAAATGCTCTGTGTCGTGGACATCCCTGAAGAATATGTCCTTGTGGT-GTTG 592
|| ||||||||| |||||||| ||||||||||||||||| |||| |||| | |||
Sbjct 725 -GAA-TCCCAAATGTTCTGTGTCTTGGACATCCCTGAAGAACCTGTCATTGT-ATCATTG 781
Query 593 CAAGC-TCTCTGATGAATCCATTGCTAAGATCCTATTTGGTTGTCCGATTCTCGAAAGCT 651
||| | ||||||||||||||||||||| || |||| ||||||||| |||||||||||||
Sbjct 782 CAA-CATCTCTGATGAATCCATTGCTATTATTCTATCTGGTTGTCCCATTCTCGAAAGCT 840
Query 652 TAACATTGTGTTTCTGCAAGGAACTGAAGGTTCTTGATCTCAGCAAATCACCGCGTCTGA 711
|| |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 841 TATTGTTGTTTTTCTGCAAGAAACTGAAGGTCCTTGATCTCAGCAAATCACCGCGTCTGA 900
Query 712 TAACATTAGTAATTTA-TAACG-ACAGTGT-GAATCCGGGGCCAAGGA-AGATCGTGGCA 767
||||||||| ||| | | || | | ||| |||| || ||||| | || |||| |||
Sbjct 901 TAACATTAGAAATC-ACT--CGTAGA-TGTCGAAT--GGAGCCAAC-ACAGCTCGTTGCA 953
Query 768 CCACATATCCATCGTCTCAGATTGAAAAACACTCAGTTACCATGTGATTTATTAGTTGAT 827
|||||||||| | |||||||||||| |||| || || |||||||| |||| ||||||
Sbjct 954 CCACATATCCGTTGTCTCAGATTGATAAACTCTGAGAAACCATGTGCTTTA---GTTGAT 1010
Query 828 GTCTCATCTTTAACCGAAGCTAAACTAGACATTA--GCTATAACTCC-TACCGT-GA-AA 882
||||| |||||| || ||||| |||||||||||| ||| || | | || || || ||
Sbjct 1011 GTCTCCTCTTTATCCCAAGCTGAACTAGACATTACCGCT-TA-CGCAATA--GTTGATAA 1066
Query 883 -AA-CTGAACGCTGATTTACTTCACATCATGGTGCTAGAGAGGCTAGACAAGTGTCAGAA 940
|| ||| | |||||||| | ||| | ||||||| || ||| | |||| |||||||||||
Sbjct 1067 TAAACTGGAGGCTGATTTTCATCAGACCATGGTGGTAAAGATGTTAGAAAAGTGTCAGAA 1126
Query 941 TGTAGAGAAGCTTACTTTGGGGG-AAAGCTTTCTCGAGATTTTATCTCTTGCCGAGCTCC 999
||| ||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||
Sbjct 1127 TGTGGAGAAGCTTACTTTGGGGGCAAA-CTTTCTTAAGATGTTATCTCTTGCCGAGCTCC 1185
Query 1000 GTGGTGTTCCTTTTCCAAACTTCAAGGTTAGAGCTTTAACGCTTGAGACACCGATCTCTC 1059
|||||||| |||||||||| || |||| || |||| | | ||||||||| ||||||||
Sbjct 1186 GTGGTGTTTCTTTTCCAAAGTTGAAGGCTAAAGCTCTGATACTTGAGACAATGATCTCTC 1245
Query 1060 -ACTATGTAATTCCTGGTATAGTAAGGGTGCTACAAAACTCTCCTGAATTAAAGAAGCTA 1118
| ||||| |||| ||||||||||| ||||||||||||||| ||||| || |||||||||
Sbjct 1246 GA-TATGTTATTCATGGTATAGTAAAGGTGCTACAAAACTCGCCTGACTTGAAGAAGCTA 1304
Query 1119 ACCCTAAAATACAAAAGGGA-TGATGGCT--T--C--ATACCGG--GCATCTATATTGAC 1169
||| || | ||| ||| || |||| | | ||||||| | | | ||||||||
Sbjct 1305 ACCATACACC-CAATGGGGTCTGCCGGCTCATATCCCATACCGGAAG-AGC-ATATTGAC 1361
Query 1170 GAAA-ACCTGCG-TTCTCATGGCTTGGATACGGATAAATGCTGGACCTCGGAAGCG-A-G 1225
| | || || | ||||||||||||| || |||| || ||||| |||||| | | |
Sbjct 1362 -ATATACTTG-GATTCTCATGGCTTGAATTGGGATCCATCCTGGAGCTCGGA-GTTTAAG 1418
Query 1226 AGT-CTTCAA--AG-ACATTT-GCCCCTTGAGAGCATACT--CTTCGTTTATACAACTTG 1278
| |||| || | || | | | | |||| | | |||||||| | |||||||
Sbjct 1419 AACACTTCCCGCAGGA-ATGTAGAGTCA--A-AGCA-AGTGGCTTCGTTTCTGCAACTTG 1473
Query 1279 TTCTTAAAACCACAG-AGACATTAGAGAAGATGGTCGTAATGTTAGAACCTTATTTTATA 1337
| |||||||||| | | ||||||||| ||| |||| || ||| ||| |||| | | |
Sbjct 1474 TGCTTAAAACCATATCA-ACATTAGAGTTGATTGTCGCAAGGTTGGAAGGTTATATCAAA 1532
Query 1338 GCAAAAGGTGTTATGAAAGAGTTGCTTGAGATGATTCCATTGCTTACTCGCAACATCAAT 1397
| || | || || || | ||||||| | ||||| ||||| ||||| ||||||||| | ||
Sbjct 1533 GGAAGACGT-TT-TGTA-GAGTTGCGTCAGATGGTTCCAATGCTTCCTCGCAACAACGAT 1589
Query 1398 GTCTCCATTGTG 1409
||||||||||||
Sbjct 1590 GTCTCCATTGTG 1601
> AT1G60180.1 | Symbols: | pseudogene of F-box family protein
| chr1:22195525-22196685 REVERSE LENGTH=891
Length=891
Score = 307 bits (166), Expect = 5e-82
Identities = 457/593 (77%), Gaps = 38/593 (6%)
Strand=Plus/Plus
Query 537 ATTCCCAAATGCTCTGTGTCGTGGACATCCCTGAAGAA-TATGTCCTTGTGGTGTTGCAA 595
||||| | ||| || || || ||||| ||||||||||| | ||||| || | | ||| |
Sbjct 4 ATTCCTAGATGTTCCGTATCTTGGACGTCCCTGAAGAAGT-TGTCCCTGCGTTTTTGTGA 62
Query 596 GCTCTCTGATGAATCCATTGCTAAGATCCTATTTGGTTGTCCGATTCTCGAAAGCTTAAC 655
|||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 63 GCTCTCTGATGAATGTATTGCGAAGATTCTATCTGGTTGTCCGATTCTCGAAAGCTTAAC 122
Query 656 ATTGTGTTTCTGCAAGGAACTGAAGGTTCTTGATCTCAGCAAATCACCGCGTCT-GATAA 714
||||| ||||| | || | |||||||||||| |||||||| | ||| || || ||
Sbjct 123 ATTGTCCCACTGCATCTACCTTACGGTTCTTGATCTTAGCAAATCGCTGCG-CTTGAGAA 181
Query 715 CATTAGTAATTTA-TAACGACAGTGTGAATCCGGGGCCAAGGAAGATCGTGGCACCACAT 773
|||||| ||| | | ||| || ||| || |||||||| |||| |||||||| |||
Sbjct 182 CATTAGAAATAGCCTG-CAACATTGACAATACGAGGCCAAGGCAGATTGTGGCACCGCAT 240
Query 774 ATCCATCGTCTCAGATTGAAAAAC-ACTCAGTTACCATGTGATTTATTAGTTGATGTCTC 832
||||||||||||||| |||||| | | ||||| |||||||| |||| |||||||||||
Sbjct 241 ATCCATCGTCTCAGACTGAAAACCTA-TCAGTCACCATGTGCTTTA---GTTGATGTCTC 296
Query 833 ATCTTTA-ACCGAAGCTAAACTAGACA-TTAGC-TATAACTC-CTACCGTGAAAAAC--T 886
|||||| | |||||| || | ||| || | | || ||| | | | | ||| || |
Sbjct 297 GTCTTTAGAT-GAAGCTCAAGTGGACTGTTT-CATTTA-CTCAC-ATC-T-AAAGACCCT 350
Query 887 -GAACGCTGATTTACTTCAC-ATCATGGTGCT-AGAGAGGCTAGACAAGT-GTCAGAATG 942
|| |||| |||||||||| | ||| | || | | | |||||| |||| | |||||||
Sbjct 351 CGA-CGCTTATTTACTTCAAGA-CAT--T-CTTAAA-ATGCTAGAGAAGTTG-CAGAATG 403
Query 943 TAGAGAAGCTTACTTTGGGG-GAAAGCTTTCT-CGAGATTTTATCTCTTGCCGAGCTCCG 1000
||||||||||| ||| ||| | || | |||| | |||||||||||||||||||| | |
Sbjct 404 CAGAGAAGCTTATTTTTGGGTGCAA-CATTCTTC-AGATTTTATCTCTTGCCGAGGTTTG 461
Query 1001 TGGTGTTCCTTTTCCAAACTTCAAGGTTAGAGCTTTAACGCTTGAGACACCGATCTCTCA 1060
||| ||||||| || | |||||| | |||||| || ||||||||| |||| |||
Sbjct 462 CGGTCTTCCTTTCCCGATGTTCAAGACAAAAGCTTTGACTCTTGAGACAGATATCTTTCA 521
Query 1061 CTATGTAATTCCTGGTATAGTAAGGGTGCTACAAAACTCTCCTGAATTAAAGA 1113
||||| ||||||||||||| ||| | |||||||||| ||||| |||||||
Sbjct 522 GTATGTTATTCCTGGTATAGAAAGACTTTTACAAAACTCACCTGATTTAAAGA 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 205383464642
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5