BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg934878 Length=4121 Score E Sequences producing significant alignments: (Bits) Value AT2G40720.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 4056 0.0 AT3G03360.1 | Symbols: | F-box/RNI-like superfamily protein | ... 658 0.0 AT1G60180.1 | Symbols: | pseudogene of F-box family protein | ... 307 5e-82 > AT2G40720.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:16987269-16989851 FORWARD LENGTH=2583 Length=2583 Score = 4056 bits (2196), Expect = 0.0 Identities = 2458/2586 (95%), Gaps = 12/2586 (0%) Strand=Plus/Plus Query 1524 ATGCGTTTCAAGCTTCACGACGTTCACATTCGTCGGCGACTTTCTCGTTTAGCTGATTCT 1583 |||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||| Sbjct 1 ATGCGTTTCAAGCTTCACGACGTTCACATTCGTCGGGGACTTTGTTGTGTAGCTGATTCT 60 Query 1584 TACATTTCTCCGGCATCGGTTAATTCAGGAATCAGAGCACTAATTCAGAAAGGAGAGTAT 1643 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 TACATTTCTCCGGCATCGATTAATTCAGGAATCAGAGCTCTAATTCAGAAAGGAGAGTAT 120 Query 1644 TTACAAGCTCTGCATTTATACACTAAGCATGATGGTTCTTCTCCTTTGTGGACTTCCGTT 1703 |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 121 CTACAAGCTCTGCATTTATACTCTAAGCATGATGGTTCTTCTCCTTTCTGGACTTCCGTT 180 Query 1704 TTCACATTTCCTTCTCTTCTTAAAGCTTGCTCTTCTCTTACGAATCTCAGCTCTGGCAAA 1763 ||||| ||||||||||| |||||||||||||| |||||||||||||||| | ||| ||| Sbjct 181 TTCACGTTTCCTTCTCTACTTAAAGCTTGCTCGGCTCTTACGAATCTCAGTTATGGGAAA 240 Query 1764 ACCATTCATGGTTCGATCATCGTGTTGGGTTGGCGATATGATCCTTTCATCGCAACCTCG 1823 ||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||||| Sbjct 241 ACCATTCATGGTTCGGTCGTCGTGTTGGGATGGCGATATGATCCTTTCATTGCAACCTCG 300 Query 1824 CTTGTCAATATGTATGTAAAATGTGGTTTTTTAGATTATGCCGTCCAAGTGTTCGACGGT 1883 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 CTTGTTAATATGTATGTAAAATGTGGGTTTTTAGATTATGCCGTCCAAGTGTTCGACGGT 360 Query 1884 TGG--TC----TCAGAGTGGAGTTTCTGCTCGGGATGTCACAGTTTGTAACTCTATGATT 1937 ||| || ||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 361 TGGTCTCAGAGTCAGAGTGGAGTTTCTGCTCGGGATGTTACTGTTTGGAACTCTATGATT 420 Query 1938 GATGGGTACTTCAAATTTCGACGATTTAAGGAAGGGGTTGGTTGTTTTCGTCGGATGCTT 1997 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 421 GATGGGTACTTCAAATTTCGAAGATTTAAGGAAGGGGTTGGTTGTTTTCGTCGGATGCTG 480 Query 1998 GTGTTGGGTGTTAGACCTGATGCTTTCTCGTTATCCATTGTTGTAAGTGTTTTGTGTAAA 2057 ||||| ||||| |||||||||||||| || |||||||||||||| |||||| |||||||| Sbjct 481 GTGTTTGGTGTAAGACCTGATGCTTTTTCCTTATCCATTGTTGTTAGTGTTATGTGTAAA 540 Query 2058 GAAGGAAACTTTAGGCGGGAAGATGGGAAACAGATTCATGGGTATATGTTGAGGAATTCG 2117 ||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||| Sbjct 541 GAAGGAAACTTTAGGCGGGAAGAAGGGAAACAGATTCATGGATTTATGTTAAGGAATTCG 600 Query 2118 TTAGATGGTGATTCGTTCTTAAAAACTGCTTTGATTGATATGTATTTCAAGTTTGGGTTA 2177 |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 601 TTAGATACTGATTCGTTCTTGAAAACTGCTTTGATTGATATGTATTTCAAGTTTGGTTTA 660 Query 2178 TCGACAGATGCGTGGAGAGTTTTTGTGGAGATTGAGGATAAATCGAATGTTGTACTATGG 2237 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TCGATAGATGCGTGGAGAGTTTTTGTGGAGATTGAGGATAAATCGAATGTTGTACTATGG 720 Query 2238 AATGTGATGATTGTTGGGTTTGGTGGTAGTGGGATCTGTGAATCTAGCTTGGAGTTGTAT 2297 |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 721 AATGTGATGATTGTAGGGTTTGGCGGTAGTGGGATCTGTGAATCTAGCTTGGATTTGTAT 780 Query 2298 ATGCTTGCAAAGAGTAACAGTGTCAAGCTTGTTTCCACTTCATTTACTGGAGCTCTTGGT 2357 ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 781 ATGCTTGCAAAGAATAACAGTGTCAAGCTTGTTTCCACTTCATTCACTGGAGCTCTTGGT 840 Query 2358 GCGTGTAGTCAAAGTGAGAATTCTGGTTTCGGTAGGCAGATCCATTGCGACGTTGTGAAG 2417 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 841 GCGTGTAGTCAAAGTGAGAATTCTGGTTTCGGTAGGCAGATCCATTGCGACGTGGTGAAG 900 Query 2418 ATGGGACTTGACAATGACCCGTACGTTTCTACTTCTCTGCTGTCAATGTATTCAAAATGC 2477 ||||||||| ||||||||||||| |||| ||||||||| |||||||||||||||||||| Sbjct 901 ATGGGACTTCACAATGACCCGTATGTTTGTACTTCTCTACTGTCAATGTATTCAAAATGT 960 Query 2478 GGTATGGTTGGTGAGGCAGAAACTGTCTTCAGTTGCGTTGTGGATAAAAGACTTGAGATC 2537 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GGTATGGTTGGTGAGGCAGAAACTGTCTTCAGTTGCGTTGTGGATAAAAGACTTGAGATA 1020 Query 2538 TGGAATGCTATGGTTGCAGCTTACGTAGAGAATGATAATGGGTACTCTGCTTTGGAATTG 2597 ||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||| Sbjct 1021 TGGAATGCTATGGTTGCAGCTTATGCAGAGAATGATTATGGGTACTCTGCTTTGGATTTG 1080 Query 2598 TTTGGTTTCATGAGACAGAAAAGTGTCTTGCCTGATTCTTTTACCTTGTCGAATGTTATA 2657 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 TTCGGTTTCATGAGGCAGAAAAGTGTCTTGCCTGATTCTTTTACCTTGTCGAATGTTATA 1140 Query 2658 TCCTGTTGCAGCATGTTTGGATTGTATGACTATGGCAAATCAGTCCACGCGGAACTGTTT 2717 |||||||||||| | || ||||||||| |||||||||||||||||||||| ||||||||| Sbjct 1141 TCCTGTTGCAGCGTATTGGGATTGTATAACTATGGCAAATCAGTCCACGCAGAACTGTTT 1200 Query 2718 AAGAGACCGATACAAAGTACGCCTGCAATAGAGAGTGCTTTACTCACTCTGTACTCCAAA 2777 ||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| Sbjct 1201 AAGAGACCGATACAAAGTACGTCTACAATAGAGAGTGCTTTACTCACTCTGTATTCCAAG 1260 Query 2778 TGTGGATGTGATACTGATGCTTACTTAGTCTTCAAATCAATGGAAGAAAAAGATATGGTT 2837 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 TGTGGATGTGATCCTGATGCTTACTTAGTCTTCAAATCAATGGAAGAAAAAGATATGGTT 1320 Query 2838 GCGTGGGGCTCCCTGATCTCAGGACTTTGCAAGAATGGGAAATTCAAAGAGGCAT-TGAA 2896 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 1321 GCGTGGGGCTCCCTGATCTCAGGACTTTGCAAGAATGGGAAATTCAAAGAGGC-TCTAAA 1379 Query 2897 AGTTTTTGGGGACATGAAAGATGATGATGATAGCTTGAAACCTGATTCCGATATTATGAC 2956 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1380 AGTTTTTGGGGACATGAAAGATGATGATGATAGCTTGAAACCTGATTCTGATATTATGAC 1439 Query 2957 GAGTGTTATAAACGCATGCGCCGGATTAGAGGCTCTCAGTTTTGGCCTTCAGGTTCATGG 3016 ||| |||| ||||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct 1440 GAGCGTTACAAACGCATGTGCTGGATTAGAGGCTCTCAGGTTTGGCCTTCAGGTTCATGG 1499 Query 3017 CAGCATGATTAAAACTGGGCTAGTGCTTAATGTTTTTGTTGGCAGCTCCCTTATTGATCT 3076 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1500 CAGCATGATTAAAACTGGGCTAGTGCTGAATGTTTTTGTTGGCAGCTCCCTTATTGATCT 1559 Query 3077 GTATTCTAAGTGTGGCTTACCAGAAATGGCTCTCAAAGTTTTCACTAGCATGAG-ACCGG 3135 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1560 GTATTCTAAGTGTGGCTTACCAGAAATGGCTCTCAAAGTTTTCACTAGCATGAGCAC-GG 1618 Query 3136 AAAACATTGTTGCCTGGAATTCAATGATATCTTGCTACAGCCGAAACAACCTTCCAGAAC 3195 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 AAAACATGGTTGCCTGGAATTCAATGATATCTTGCTACAGCCGAAACAACCTTCCAGAAC 1678 Query 3196 TGTCGATTGAACTTTTCAATCTGATGCTCAGTCAAGGTATCTTCCCAGATTCAGTATCCA 3255 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1679 TGTCGATTGACCTTTTCAATCTGATGCTCAGTCAAGGTATCTTCCCTGATTCAGTATCCA 1738 Query 3256 TCACAAGTGTCCTTGTAGCAATCTCATCGACTGCAAGCTTGCTAAAAGGGAAAAGTCTAC 3315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1739 TCACAAGTGTCCTTGTAGCAATCTCATCGACTGCAAGCTTGCTAAAAGGGAAAAGTCTAC 1798 Query 3316 ATGGTTATACATTACGACTTGGCATTCCTTCAGATACTCACCTGAAAAACGCTTTGATTG 3375 |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1799 ATGGTTATACATTAAGACTCGGCATTCCTTCGGATACTCACCTGAAAAACGCTTTGATTG 1858 Query 3376 ATATGTATGTAAAGTGCGGGTTTTCGAAGTATGCAGAGAATATCTTCAAGAAAATGCAGC 3435 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1859 ATATGTATGTAAAATGCGGGTTTTCGAAGTATGCAGAGAACATCTTCAAGAAAATGCAGC 1918 Query 3436 ATAAGAGCCTGATCACTTGGAACCTAATGATATATGGGTATGGATCCCATGGAGATTGTC 3495 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1919 ATAAGAGCTTGATCACTTGGAACCTAATGATATATGGGTATGGATCCCATGGAGATTGTA 1978 Query 3496 GTACAGCATTGAGTCTGTTCGATGAGCTGAAAAAGGCAGGAGAAACGCCCGATGATGTAA 3555 ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1979 TTACAGCATTGAGTCTGTTCGATGAGATGAAAAAGGCAGGAGAATCGCCCGATGATGTAA 2038 Query 3556 CATTCCTGTCTCTGATTTCAGCCTGCAATCATTCCGGTTTTGTGGAGGAAGGGAAAAACT 3615 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2039 CATTCCTGTCTCTGATTTCAGCCTGCAATCATTCCGGTTTTGTGGAGGAAGGGAAAAACA 2098 Query 3616 TTTTTGAGATCATGAAACAAGATTATGGAATTGAACCAAAAATGGAACATTATGCAAATA 3675 |||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||| Sbjct 2099 TTTTTGAGTTCATGAAACAAGACTATGGAATCGAACCAAATATGGAACATTATGCAAATA 2158 Query 3676 TGGTGGATCTTCTAGGACGTGCGGGTCGCCTGGAAGAAGCTTACAGTTTTATAAAAGCAA 3735 |||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| Sbjct 2159 TGGTGGATCTTCTAGGACGTGCAGGTCTCCTCGAAGAAGCTTACAGTTTTATAAAAGCAA 2218 Query 3736 TGCCTACTGAAGCAGACAGTAGCATATGGCTCTGCCTCTTATCTGCTTCTAGAACTCATC 3795 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2219 TGCCTATTGAAGCAGACAGTAGCATATGGCTCTGCCTCTTATCTGCTTCAAGAACTCATC 2278 Query 3796 ATAATGTAGAACTTGGAATATTGTCTGCTGAGAAGTTGTTGATAATGGAACCGGAAAGAG 3855 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2279 ATAATGTAGAACTTGGGATATTGTCTGCTGAGAAGTTGTTGAGAATGGAACCGGAAAGAG 2338 Query 3856 GCAGTACCTATGTTCAGCTAATCAATCTTTACATGGAAGCAGGATTGAAGAACGAAGCAG 3915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2339 GCAGTACCTATGTTCAGCTAATCAATCTTTACATGGAAGCAGGATTGAAGAACGAAGCAG 2398 Query 3916 CAAAGCTGTTGGGTGAGATGAAGGAGAGAGGCTTGCAGAAACAACCTGGTTGCAGTTGGA 3975 |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 2399 CAAAGCTGTTGGGTCTGATGAAGGAGAAAGGCTTGCATAAACAACCTGGTTGCAGTTGGA 2458 Query 3976 TTGAAGTTAGCGATATATCTAATGTTTTCTTTTCAGGAGGTTCATCTTCTCCAATAAAGG 4035 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| Sbjct 2459 TTGAAGTTAGCGATAGAACTAATGTTTTCTTTTCAGGAGGTTCATCTTCTCCAATGAAGG 2518 Query 4036 CTGAGATCTTCAAAGTATTGAATAGGCTGAAGAGTAATATGGTA-ACTGAGGACAAGCCT 4094 ||||||| ||||| |||||||||||| | ||||||||||||||| | |||||||||| | Sbjct 2519 CTGAGATATTCAACGTATTGAATAGGTTAAAGAGTAATATGGTAGA-TGAGGACAAGGCA 2577 Query 4095 ACTTGA 4100 |||||| Sbjct 2578 ACTTGA 2583 > AT3G03360.1 | Symbols: | F-box/RNI-like superfamily protein | chr3:794906-797013 FORWARD LENGTH=1732 Length=1732 Score = 658 bits (356), Expect = 0.0 Identities = 1027/1332 (77%), Gaps = 122/1332 (9%) Strand=Plus/Plus Query 154 TGCCTGATG-TGATCCTCCAAGTTATCCTCTCCTTA-ATTCCGACCAGATTCGCCATCAG 211 ||||||||| | || |||||| | || |||||| || |||| |||||||| || |||| Sbjct 316 TGCCTGATGAT-ATTCTCCAACTAATTCTCTCC-TATCTTCCAACCAGATTGGCGATCAA 373 Query 212 GACTTCCGTCTTGTCCAGACGATGGAGGCATGTATGGTCCTATATACCT--TCTCTCTAC 269 |||||||| || ||||| ||||||||||||||||||| || |||| | || |||| | Sbjct 374 AACTTCCGTTTTATCCAGGCGATGGAGGCATGTATGGT-CT-GATACATGGTCCCTCTCC 431 Query 270 TTCCATAAGGACAGACCGGATGCTAATTCG-ATAAACGA-AACCCTAGCTCGCTACAAGG 327 ||||||| |||||||||||||||| || | || ||| | || ||||| |||||||| || Sbjct 432 TTCCATAGGGACAGACCGGATGCTCCTT-GTATTAAC-AGAATCCTAGATCGCTACAGGG 489 Query 328 CTCCGAAGATGATGAGTTTCCGTATCTGTAC------CAGTG-AG-C----T---C-GA- 370 |||| |||||||||||||| ||||||||| | ||| | || | | | || Sbjct 490 CTCCCAAGATGATGAGTTTTCGTATCTGTTCTTGTTGCAGGGCAGCCTGTATCAGCAGAC 549 Query 371 --TA-A-TCTTCCTAACATGGACAGTTGGATCAAGTTCGCTTTGTCCAGAAACGTGGAGA 426 | | | | || |||| |||||||||||||| ||||| ||||| |||||||||||| Sbjct 550 CCGACACGCATGCTGACATCGACAGTTGGATCAACTTCGCCATGTCCCGAAACGTGGAGA 609 Query 427 ATCTGTCGCTGTATTTGGAGCGGAGGAGTGACTATAATATCCCTGAATTCCTCTACGTCA 486 ||||||| |||||| | || ||||| | | ||| |||||||||||||||| ||| ||| Sbjct 610 ATCTGTCCCTGTATCTCGA--TGAGGA-TAAATATGATATCCCTGAATTCCTTTACATCA 666 Query 487 ATTCCTCTGTCAAG-AATCTCTGCATTGA-----G-T-C---AA-TATTCTAT-TCTAAT 533 |||||||| ||||| || |||| | |||| | | | || ||| ||| ||| | Sbjct 667 ATTCCTCTCTCAAGCAA-CTCTACCTTGATTTCGGCTGCAAAAAGGATTTTATATCT-CT 724 Query 534 ATAATTCCCAAATGCTCTGTGTCGTGGACATCCCTGAAGAATATGTCCTTGTGGT-GTTG 592 || ||||||||| |||||||| ||||||||||||||||| |||| |||| | ||| Sbjct 725 -GAA-TCCCAAATGTTCTGTGTCTTGGACATCCCTGAAGAACCTGTCATTGT-ATCATTG 781 Query 593 CAAGC-TCTCTGATGAATCCATTGCTAAGATCCTATTTGGTTGTCCGATTCTCGAAAGCT 651 ||| | ||||||||||||||||||||| || |||| ||||||||| ||||||||||||| Sbjct 782 CAA-CATCTCTGATGAATCCATTGCTATTATTCTATCTGGTTGTCCCATTCTCGAAAGCT 840 Query 652 TAACATTGTGTTTCTGCAAGGAACTGAAGGTTCTTGATCTCAGCAAATCACCGCGTCTGA 711 || |||| |||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 841 TATTGTTGTTTTTCTGCAAGAAACTGAAGGTCCTTGATCTCAGCAAATCACCGCGTCTGA 900 Query 712 TAACATTAGTAATTTA-TAACG-ACAGTGT-GAATCCGGGGCCAAGGA-AGATCGTGGCA 767 ||||||||| ||| | | || | | ||| |||| || ||||| | || |||| ||| Sbjct 901 TAACATTAGAAATC-ACT--CGTAGA-TGTCGAAT--GGAGCCAAC-ACAGCTCGTTGCA 953 Query 768 CCACATATCCATCGTCTCAGATTGAAAAACACTCAGTTACCATGTGATTTATTAGTTGAT 827 |||||||||| | |||||||||||| |||| || || |||||||| |||| |||||| Sbjct 954 CCACATATCCGTTGTCTCAGATTGATAAACTCTGAGAAACCATGTGCTTTA---GTTGAT 1010 Query 828 GTCTCATCTTTAACCGAAGCTAAACTAGACATTA--GCTATAACTCC-TACCGT-GA-AA 882 ||||| |||||| || ||||| |||||||||||| ||| || | | || || || || Sbjct 1011 GTCTCCTCTTTATCCCAAGCTGAACTAGACATTACCGCT-TA-CGCAATA--GTTGATAA 1066 Query 883 -AA-CTGAACGCTGATTTACTTCACATCATGGTGCTAGAGAGGCTAGACAAGTGTCAGAA 940 || ||| | |||||||| | ||| | ||||||| || ||| | |||| ||||||||||| Sbjct 1067 TAAACTGGAGGCTGATTTTCATCAGACCATGGTGGTAAAGATGTTAGAAAAGTGTCAGAA 1126 Query 941 TGTAGAGAAGCTTACTTTGGGGG-AAAGCTTTCTCGAGATTTTATCTCTTGCCGAGCTCC 999 ||| ||||||||||||||||||| ||| |||||| |||| ||||||||||||||||||| Sbjct 1127 TGTGGAGAAGCTTACTTTGGGGGCAAA-CTTTCTTAAGATGTTATCTCTTGCCGAGCTCC 1185 Query 1000 GTGGTGTTCCTTTTCCAAACTTCAAGGTTAGAGCTTTAACGCTTGAGACACCGATCTCTC 1059 |||||||| |||||||||| || |||| || |||| | | ||||||||| |||||||| Sbjct 1186 GTGGTGTTTCTTTTCCAAAGTTGAAGGCTAAAGCTCTGATACTTGAGACAATGATCTCTC 1245 Query 1060 -ACTATGTAATTCCTGGTATAGTAAGGGTGCTACAAAACTCTCCTGAATTAAAGAAGCTA 1118 | ||||| |||| ||||||||||| ||||||||||||||| ||||| || ||||||||| Sbjct 1246 GA-TATGTTATTCATGGTATAGTAAAGGTGCTACAAAACTCGCCTGACTTGAAGAAGCTA 1304 Query 1119 ACCCTAAAATACAAAAGGGA-TGATGGCT--T--C--ATACCGG--GCATCTATATTGAC 1169 ||| || | ||| ||| || |||| | | ||||||| | | | |||||||| Sbjct 1305 ACCATACACC-CAATGGGGTCTGCCGGCTCATATCCCATACCGGAAG-AGC-ATATTGAC 1361 Query 1170 GAAA-ACCTGCG-TTCTCATGGCTTGGATACGGATAAATGCTGGACCTCGGAAGCG-A-G 1225 | | || || | ||||||||||||| || |||| || ||||| |||||| | | | Sbjct 1362 -ATATACTTG-GATTCTCATGGCTTGAATTGGGATCCATCCTGGAGCTCGGA-GTTTAAG 1418 Query 1226 AGT-CTTCAA--AG-ACATTT-GCCCCTTGAGAGCATACT--CTTCGTTTATACAACTTG 1278 | |||| || | || | | | | |||| | | |||||||| | ||||||| Sbjct 1419 AACACTTCCCGCAGGA-ATGTAGAGTCA--A-AGCA-AGTGGCTTCGTTTCTGCAACTTG 1473 Query 1279 TTCTTAAAACCACAG-AGACATTAGAGAAGATGGTCGTAATGTTAGAACCTTATTTTATA 1337 | |||||||||| | | ||||||||| ||| |||| || ||| ||| |||| | | | Sbjct 1474 TGCTTAAAACCATATCA-ACATTAGAGTTGATTGTCGCAAGGTTGGAAGGTTATATCAAA 1532 Query 1338 GCAAAAGGTGTTATGAAAGAGTTGCTTGAGATGATTCCATTGCTTACTCGCAACATCAAT 1397 | || | || || || | ||||||| | ||||| ||||| ||||| ||||||||| | || Sbjct 1533 GGAAGACGT-TT-TGTA-GAGTTGCGTCAGATGGTTCCAATGCTTCCTCGCAACAACGAT 1589 Query 1398 GTCTCCATTGTG 1409 |||||||||||| Sbjct 1590 GTCTCCATTGTG 1601 > AT1G60180.1 | Symbols: | pseudogene of F-box family protein | chr1:22195525-22196685 REVERSE LENGTH=891 Length=891 Score = 307 bits (166), Expect = 5e-82 Identities = 457/593 (77%), Gaps = 38/593 (6%) Strand=Plus/Plus Query 537 ATTCCCAAATGCTCTGTGTCGTGGACATCCCTGAAGAA-TATGTCCTTGTGGTGTTGCAA 595 ||||| | ||| || || || ||||| ||||||||||| | ||||| || | | ||| | Sbjct 4 ATTCCTAGATGTTCCGTATCTTGGACGTCCCTGAAGAAGT-TGTCCCTGCGTTTTTGTGA 62 Query 596 GCTCTCTGATGAATCCATTGCTAAGATCCTATTTGGTTGTCCGATTCTCGAAAGCTTAAC 655 |||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||| Sbjct 63 GCTCTCTGATGAATGTATTGCGAAGATTCTATCTGGTTGTCCGATTCTCGAAAGCTTAAC 122 Query 656 ATTGTGTTTCTGCAAGGAACTGAAGGTTCTTGATCTCAGCAAATCACCGCGTCT-GATAA 714 ||||| ||||| | || | |||||||||||| |||||||| | ||| || || || Sbjct 123 ATTGTCCCACTGCATCTACCTTACGGTTCTTGATCTTAGCAAATCGCTGCG-CTTGAGAA 181 Query 715 CATTAGTAATTTA-TAACGACAGTGTGAATCCGGGGCCAAGGAAGATCGTGGCACCACAT 773 |||||| ||| | | ||| || ||| || |||||||| |||| |||||||| ||| Sbjct 182 CATTAGAAATAGCCTG-CAACATTGACAATACGAGGCCAAGGCAGATTGTGGCACCGCAT 240 Query 774 ATCCATCGTCTCAGATTGAAAAAC-ACTCAGTTACCATGTGATTTATTAGTTGATGTCTC 832 ||||||||||||||| |||||| | | ||||| |||||||| |||| ||||||||||| Sbjct 241 ATCCATCGTCTCAGACTGAAAACCTA-TCAGTCACCATGTGCTTTA---GTTGATGTCTC 296 Query 833 ATCTTTA-ACCGAAGCTAAACTAGACA-TTAGC-TATAACTC-CTACCGTGAAAAAC--T 886 |||||| | |||||| || | ||| || | | || ||| | | | | ||| || | Sbjct 297 GTCTTTAGAT-GAAGCTCAAGTGGACTGTTT-CATTTA-CTCAC-ATC-T-AAAGACCCT 350 Query 887 -GAACGCTGATTTACTTCAC-ATCATGGTGCT-AGAGAGGCTAGACAAGT-GTCAGAATG 942 || |||| |||||||||| | ||| | || | | | |||||| |||| | ||||||| Sbjct 351 CGA-CGCTTATTTACTTCAAGA-CAT--T-CTTAAA-ATGCTAGAGAAGTTG-CAGAATG 403 Query 943 TAGAGAAGCTTACTTTGGGG-GAAAGCTTTCT-CGAGATTTTATCTCTTGCCGAGCTCCG 1000 ||||||||||| ||| ||| | || | |||| | |||||||||||||||||||| | | Sbjct 404 CAGAGAAGCTTATTTTTGGGTGCAA-CATTCTTC-AGATTTTATCTCTTGCCGAGGTTTG 461 Query 1001 TGGTGTTCCTTTTCCAAACTTCAAGGTTAGAGCTTTAACGCTTGAGACACCGATCTCTCA 1060 ||| ||||||| || | |||||| | |||||| || ||||||||| |||| ||| Sbjct 462 CGGTCTTCCTTTCCCGATGTTCAAGACAAAAGCTTTGACTCTTGAGACAGATATCTTTCA 521 Query 1061 CTATGTAATTCCTGGTATAGTAAGGGTGCTACAAAACTCTCCTGAATTAAAGA 1113 ||||| ||||||||||||| ||| | |||||||||| ||||| ||||||| Sbjct 522 GTATGTTATTCCTGGTATAGAAAGACTTTTACAAAACTCACCTGATTTAAAGA 574 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 205383464642 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5