BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934882
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40580.1 | Symbols: | Protein kinase superfamily protein | ... 654 0.0
> AT2G40580.1 | Symbols: | Protein kinase superfamily protein
| chr2:16943864-16945003 FORWARD LENGTH=1140
Length=1140
Score = 654 bits (354), Expect = 0.0
Identities = 687/843 (81%), Gaps = 42/843 (5%)
Strand=Plus/Plus
Query 34 TTATTGGAGATCTGACTGAGTCTTCATTGAAGA-TAGTCTCTGTTCTTGAC-AA--AGGT 89
|||| | |||||| | |||||||||||| ||| | ||| |||||||| | || ||||
Sbjct 108 TTATCGAAGATCTAAAAGAGTCTTCATTGGAGACT-GTCAGTGTTCTTGGCAAATTAGGT 166
Query 90 ATCTACGGCTCTGTGTCCAACAACAAGAATGATTCAAACTT-GGCGAAATCTTACATGAA 148
| || ||||| ||||| | | | ||| |||||||||||| || |||||| ||| | ||
Sbjct 167 ACCTTCGGCTTTGTGT-C-TC-TCCAGAGTGATTCAAACTTAGG-GAAATCATACGTCAA 222
Query 149 GAAGACAAGTACGCTCAAACATTCCGACAATCTCGAGAGGGAGCTTAAGG-CCATGCTTC 207
|||||||||||| ||| |||| ||| | |||||||||| ||||| | ||| ||||||||
Sbjct 223 GAAGACAAGTACTCTCGAACAGTCCAAGAATCTCGAGAAGGAGC-TCAGGATCATGCTTC 281
Query 208 ACTTCCACACCAATCCCTTCATCGTCCAAGCTTCGTGCCCTCATCTTCACTTCGAGTGTA 267
||||||| |||||||||||| |||| |||||| || |||||||||||| | | ||
Sbjct 282 GTTTCCACAACAATCCCTTCATAGTCCGAGCTTCAAGCGATCATCTTCACTTTGCGACTA 341
Query 268 ACACCAAAAGCGCGACTTTGTGTTACATCTACATGGAGTATGCGTCCTTAGGCAATCTCG 327
||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 342 ACACCAAAAGCATGAGTTTGTGTTACATCTACATGGAGTATGCTTCCTTAGGGAATCTCA 401
Query 328 ACAAGATGATCTCTGATGCCGGAGGGAGATTGCCTGAATATAGTGTCAGACGTGCCACTC 387
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 402 ACAAGATGATCTCTGATGCCGGAGGGAGATTGTCTGAAGATAGTGTCAGACGTGCCACTC 461
Query 388 GTATGATCCTACAAGGACTCAAGGCTCTTCACTCGGAAGGTTACGTTCATTGCGACCTCA 447
|||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||
Sbjct 462 GTATGATCCTACAAGGACTCAAGGCTCTTCACTCTGAAGGTTTTGTCCACTGCGACCTCA 521
Query 448 AACCCTCCAATGTGTTTGTCTTCCCTTCCAACACTCCTGAAGAGCCATGGGATCTCAAGC 507
| || || ||||| ||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 522 AGCCATCAAATGTACTTGTCTTCCCTTCCAACACACGTGGAGAGCCATGGGATCTCAAGC 581
Query 508 TTACTGGTTTAGGCTTATCCAAAGGCAAAGAGCCTACTATGGACTCTAGCCTATCGTTTC 567
|| ||||||| || |||||||||| | | |||||||||||||||||| | | |||||
Sbjct 582 TTGCTGGTTTCGGTTTATCCAAAG--A--G--CCTACTATGGACTCTAGCTTGTTGTTTC 635
Query 568 CTGGAACCCTCGAG---TACATGCCGCCTGAGGCCACCGCTGAACGGTATAGGTTT-TCT 623
|||||||||| ||| |||||| |||||||||||| ||| ||| | |||||| | |
Sbjct 636 CTGGAACCCTTGAGGAGTACATGTCGCCTGAGGCCAT---TGAGCGGGACAGGTTTGT-T 691
Query 624 GGGCCGGACTTATTGGTCGGACCGGCCCGTGATATATGGTCGCTAGGGCGTACGGTTCTT 683
||| |||| | || ||||||| ||||||||||||||||| ||||| |||| ||||||
Sbjct 692 GGGAAGGACAAACTGATCGGACCAGCCCGTGATATATGGTCTCTAGGACGTATTGTTCTT 751
Query 684 AAGATGTTTGGGGGTGTCCCTCATGAGATGGGAAACTGTATCGCGTGGAGAAT--A-GAA 740
| ||||||||||||| | ||| |||| || || || || | | ||||| | | |||
Sbjct 752 AGGATGTTTGGGGGTATTCCTGTTGAGGTGAGAGGCTCTAACACATGGAGGCTGTACGAA 811
Query 741 GGGTATCTCTCTCC-AGCTGC-ACAAGACTTCTGG-AGGCAGTGCC-GTACGTGGCGACC 796
| |||||||| | || || ||| ||||| || |||| |||| | | ||||| ||
Sbjct 812 GA-TATCTCTC-CGGAG--GCCACA-GACTT-TGTTAGGCGGTGCTTGG-CATGGCGCCC 864
Query 797 TACAGA-TAGGCCCACCGTGGATAAGCTCTTGGACCATCCTTTTGTTGCTGAAAAACTTT 855
| | || | || ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 865 TTC-GAATCGGGCCACCGTGGATGAGCTCTTAGACCATCCTTTTGCTGCTGAAAAACTTC 923
Query 856 CAT 858
|||
Sbjct 924 CAT 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5